{"id":"https://openalex.org/W2067529607","doi":"https://doi.org/10.1109/saci.2012.6249983","title":"ModeRator - a software tool for comparison of stoichiometric models","display_name":"ModeRator - a software tool for comparison of stoichiometric models","publication_year":2012,"publication_date":"2012-05-01","ids":{"openalex":"https://openalex.org/W2067529607","doi":"https://doi.org/10.1109/saci.2012.6249983","mag":"2067529607"},"language":"en","primary_location":{"id":"doi:10.1109/saci.2012.6249983","is_oa":false,"landing_page_url":"https://doi.org/10.1109/saci.2012.6249983","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 7th IEEE International Symposium on Applied Computational Intelligence and Informatics (SACI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060955873","display_name":"Martins Mednis","orcid":"https://orcid.org/0000-0003-2800-7610"},"institutions":[{"id":"https://openalex.org/I116152951","display_name":"Latvia University of Life Sciences and Technologies","ror":"https://ror.org/03f077y84","country_code":"LV","type":"education","lineage":["https://openalex.org/I116152951"]}],"countries":["LV"],"is_corresponding":false,"raw_author_name":"Martins Mednis","raw_affiliation_strings":["Biosystems group, Latvia University of Agriculture, Jelgava, Latvia","Latvia University of Argiculture, Biosystems group, Liela iela 2, Jelgava, LV-3001, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosystems group, Latvia University of Agriculture, Jelgava, Latvia","institution_ids":["https://openalex.org/I116152951"]},{"raw_affiliation_string":"Latvia University of Argiculture, Biosystems group, Liela iela 2, Jelgava, LV-3001, Latvia","institution_ids":["https://openalex.org/I116152951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073965623","display_name":"Zintis Rove","orcid":null},"institutions":[{"id":"https://openalex.org/I116152951","display_name":"Latvia University of Life Sciences and Technologies","ror":"https://ror.org/03f077y84","country_code":"LV","type":"education","lineage":["https://openalex.org/I116152951"]}],"countries":["LV"],"is_corresponding":false,"raw_author_name":"Zintis Rove","raw_affiliation_strings":["Biosystems group, Latvia University of Agriculture, Jelgava, Latvia","Latvia University of Argiculture, Biosystems group, Liela iela 2, Jelgava, LV-3001, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosystems group, Latvia University of Agriculture, Jelgava, Latvia","institution_ids":["https://openalex.org/I116152951"]},{"raw_affiliation_string":"Latvia University of Argiculture, Biosystems group, Liela iela 2, Jelgava, LV-3001, Latvia","institution_ids":["https://openalex.org/I116152951"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049742407","display_name":"Vytautas Galvanauskas","orcid":"https://orcid.org/0000-0002-5472-2776"},"institutions":[{"id":"https://openalex.org/I172574986","display_name":"Kaunas University of Technology","ror":"https://ror.org/01me6gb93","country_code":"LT","type":"education","lineage":["https://openalex.org/I172574986"]}],"countries":["LT"],"is_corresponding":false,"raw_author_name":"Vytautas Galvanauskas","raw_affiliation_strings":["Kaunas University of Technology, Kaunas, Lithuania","Kaunas University of Technology, Studentu g. 50-162, LT-51368, Lithuania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kaunas University of Technology, Kaunas, Lithuania","institution_ids":["https://openalex.org/I172574986"]},{"raw_affiliation_string":"Kaunas University of Technology, Studentu g. 50-162, LT-51368, Lithuania","institution_ids":["https://openalex.org/I172574986"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6719,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.68689348,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"6","issue":null,"first_page":"97","last_page":"100"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7390229105949402},{"id":"https://openalex.org/keywords/moderation","display_name":"Moderation","score":0.6445308327674866},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.637563169002533},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.5449288487434387},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.5234212875366211},{"id":"https://openalex.org/keywords/zymomonas-mobilis","display_name":"Zymomonas mobilis","score":0.5138850212097168},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4165365695953369},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.35934704542160034},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2612547278404236},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.15652722120285034},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08245381712913513}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7390229105949402},{"id":"https://openalex.org/C93225998","wikidata":"https://www.wikidata.org/wiki/Q1941972","display_name":"Moderation","level":2,"score":0.6445308327674866},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.637563169002533},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.5449288487434387},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.5234212875366211},{"id":"https://openalex.org/C2780604136","wikidata":"https://www.wikidata.org/wiki/Q245744","display_name":"Zymomonas mobilis","level":4,"score":0.5138850212097168},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4165365695953369},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.35934704542160034},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2612547278404236},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.15652722120285034},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08245381712913513},{"id":"https://openalex.org/C53991642","wikidata":"https://www.wikidata.org/wiki/Q128991","display_name":"Biofuel","level":2,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C65183824","wikidata":"https://www.wikidata.org/wiki/Q194361","display_name":"Ethanol fuel","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/saci.2012.6249983","is_oa":false,"landing_page_url":"https://doi.org/10.1109/saci.2012.6249983","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 7th IEEE International Symposium on Applied Computational Intelligence and Informatics (SACI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1984602113","https://openalex.org/W1994655444","https://openalex.org/W2007377943","https://openalex.org/W2069687568","https://openalex.org/W2075283200","https://openalex.org/W2119315087","https://openalex.org/W2134938483","https://openalex.org/W2147469143","https://openalex.org/W2147472054","https://openalex.org/W2157092888","https://openalex.org/W2314807489","https://openalex.org/W4238101851"],"related_works":["https://openalex.org/W610932502","https://openalex.org/W3028073815","https://openalex.org/W2079755951","https://openalex.org/W2082055828","https://openalex.org/W2021444795","https://openalex.org/W1979707090","https://openalex.org/W2377984624","https://openalex.org/W2348740175","https://openalex.org/W4243049533","https://openalex.org/W2372487761"],"abstract_inverted_index":{"ModeRator":[0,56,86],"is":[1,18,57,82,107],"an":[2],"online":[3,47],"software":[4,105],"tool":[5,43,106],"for":[6],"comparison":[7],"of":[8,23,96],"stoichiometric":[9],"models":[10,25,30,95],"written":[11],"in":[12,59],"COBRA-compatible":[13],"format.":[14],"Its":[15],"main":[16],"purpose":[17],"to":[19,27,109],"detect":[20],"the":[21,29,103,112],"inconsistencies":[22],"complex":[24],"and":[26,35,62,73],"compare":[28],"even":[31],"without":[32],"having":[33],"Matlab":[34],"COBRA":[36],"toolbox":[37],"installed":[38],"on":[39,52,84,89],"a":[40,53,79],"computer.":[41,55],"The":[42,71,99],"can":[44,66],"be":[45,67],"used":[46],"at":[48],"http://biosystems.lv/moderator/":[49],"or":[50],"hosted":[51],"local":[54],"implemented":[58],"pure":[60],"PHP,":[61],"its":[63],"source":[64],"code":[65],"downloaded":[68],"from":[69],"http://sourceforge.net.":[70],"application":[72],"installation":[74],"instructions":[75],"are":[76],"available.":[77],"Additionally,":[78],"video":[80],"tutorial":[81],"available":[83],"Youlube.":[85],"was":[87],"tested":[88],"two":[90],"representative":[91],"genome-scale":[92],"metabolic":[93],"network":[94],"Zymomonas":[97],"Mobilis.":[98],"results":[100],"show":[101],"that":[102],"proposed":[104],"able":[108],"correctly":[110],"analyse/compare":[111],"models.":[113]},"counts_by_year":[{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
