{"id":"https://openalex.org/W4393066105","doi":"https://doi.org/10.1109/rivf60135.2023.10471814","title":"CellFormer: A DaViT Transformer-Based Method for Nuclei Segmentation","display_name":"CellFormer: A DaViT Transformer-Based Method for Nuclei Segmentation","publication_year":2023,"publication_date":"2023-12-23","ids":{"openalex":"https://openalex.org/W4393066105","doi":"https://doi.org/10.1109/rivf60135.2023.10471814"},"language":"en","primary_location":{"id":"doi:10.1109/rivf60135.2023.10471814","is_oa":false,"landing_page_url":"https://doi.org/10.1109/rivf60135.2023.10471814","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 RIVF International Conference on Computing and Communication Technologies (RIVF)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102602557","display_name":"Viet-Tien Pham","orcid":null},"institutions":[{"id":"https://openalex.org/I94518387","display_name":"Hanoi University of Science and Technology","ror":"https://ror.org/04nyv3z04","country_code":"VN","type":"education","lineage":["https://openalex.org/I94518387"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Viet-Tien Pham","raw_affiliation_strings":["School of Electrical and Electronic Engineering, Hanoi University of Science and Technology,Department of Automation Engineering","Department of Automation Engineering, School of Electrical and Electronic Engineering, Hanoi University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Electronic Engineering, Hanoi University of Science and Technology,Department of Automation Engineering","institution_ids":["https://openalex.org/I94518387"]},{"raw_affiliation_string":"Department of Automation Engineering, School of Electrical and Electronic Engineering, Hanoi University of Science and Technology","institution_ids":["https://openalex.org/I94518387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114116756","display_name":"Ngoc-Tu Vu","orcid":null},"institutions":[{"id":"https://openalex.org/I94518387","display_name":"Hanoi University of Science and Technology","ror":"https://ror.org/04nyv3z04","country_code":"VN","type":"education","lineage":["https://openalex.org/I94518387"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Ngoc-Tu Vu","raw_affiliation_strings":["School of Electrical and Electronic Engineering, Hanoi University of Science and Technology,Department of Automation Engineering","Department of Automation Engineering, School of Electrical and Electronic Engineering, Hanoi University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Electronic Engineering, Hanoi University of Science and Technology,Department of Automation Engineering","institution_ids":["https://openalex.org/I94518387"]},{"raw_affiliation_string":"Department of Automation Engineering, School of Electrical and Electronic Engineering, Hanoi University of Science and Technology","institution_ids":["https://openalex.org/I94518387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020470519","display_name":"Van-Truong Pham","orcid":"https://orcid.org/0000-0003-3489-0569"},"institutions":[{"id":"https://openalex.org/I94518387","display_name":"Hanoi University of Science and Technology","ror":"https://ror.org/04nyv3z04","country_code":"VN","type":"education","lineage":["https://openalex.org/I94518387"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Van-Truong Pham","raw_affiliation_strings":["School of Electrical and Electronic Engineering, Hanoi University of Science and Technology,Department of Automation Engineering","Department of Automation Engineering, School of Electrical and Electronic Engineering, Hanoi University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Electronic Engineering, Hanoi University of Science and Technology,Department of Automation Engineering","institution_ids":["https://openalex.org/I94518387"]},{"raw_affiliation_string":"Department of Automation Engineering, School of Electrical and Electronic Engineering, Hanoi University of Science and Technology","institution_ids":["https://openalex.org/I94518387"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019897482","display_name":"Thi-Thao Tran","orcid":"https://orcid.org/0009-0008-0862-1262"},"institutions":[{"id":"https://openalex.org/I94518387","display_name":"Hanoi University of Science and Technology","ror":"https://ror.org/04nyv3z04","country_code":"VN","type":"education","lineage":["https://openalex.org/I94518387"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Thi-Thao Tran","raw_affiliation_strings":["School of Electrical and Electronic Engineering, Hanoi University of Science and Technology,Department of Automation Engineering","Department of Automation Engineering, School of Electrical and Electronic Engineering, Hanoi University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Electronic Engineering, Hanoi University of Science and Technology,Department of Automation Engineering","institution_ids":["https://openalex.org/I94518387"]},{"raw_affiliation_string":"Department of Automation Engineering, School of Electrical and Electronic Engineering, Hanoi University of Science and Technology","institution_ids":["https://openalex.org/I94518387"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I94518387"],"apc_list":null,"apc_paid":null,"fwci":4.0308,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.94480719,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"165","last_page":"170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.3327000141143799,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.3327000141143799,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.3140000104904175,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6020791530609131},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.49366435408592224},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4496243894100189},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3527529239654541},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.13594114780426025},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12771165370941162},{"id":"https://openalex.org/keywords/voltage","display_name":"Voltage","score":0.09143853187561035}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6020791530609131},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.49366435408592224},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4496243894100189},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3527529239654541},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.13594114780426025},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12771165370941162},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.09143853187561035}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/rivf60135.2023.10471814","is_oa":false,"landing_page_url":"https://doi.org/10.1109/rivf60135.2023.10471814","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 RIVF International Conference on Computing and Communication Technologies (RIVF)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1901129140","https://openalex.org/W2004369799","https://openalex.org/W2095705004","https://openalex.org/W2133059825","https://openalex.org/W2194775991","https://openalex.org/W2327793514","https://openalex.org/W2884436604","https://openalex.org/W2899663614","https://openalex.org/W2980998394","https://openalex.org/W2999580839","https://openalex.org/W3034445277","https://openalex.org/W3081752372","https://openalex.org/W3092462072","https://openalex.org/W3092622437","https://openalex.org/W3094502228","https://openalex.org/W3096609285","https://openalex.org/W3097065222","https://openalex.org/W3138516171","https://openalex.org/W3139633126","https://openalex.org/W3175515048","https://openalex.org/W3179869055","https://openalex.org/W3196075503","https://openalex.org/W3203480968","https://openalex.org/W4214493665","https://openalex.org/W4214612132","https://openalex.org/W4221153029","https://openalex.org/W4303646595","https://openalex.org/W4312881242","https://openalex.org/W4319216049","https://openalex.org/W4385245566","https://openalex.org/W4386561400","https://openalex.org/W6674330103","https://openalex.org/W6687483927","https://openalex.org/W6779879114","https://openalex.org/W6784333009"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Automated":[0],"analysis":[1],"of":[2,48,56,65,102,164,202,218],"microscopic":[3],"pictures":[4],"in":[5,82,215],"computer-aided":[6],"clinical":[7],"support":[8],"systems":[9],"has":[10,79,183],"difficulty":[11],"iden-":[12],"tifying":[13],"cell":[14,37,58,187],"nuclei":[15],"inside":[16],"nuclei.":[17],"Models":[18],"based":[19],"on":[20,111,167],"the":[21,53,57,76,91,94,130,138,144,156,162,168,200,216],"U-":[22],"Net":[23],"network,":[24],"its":[25],"derivatives":[26],"or":[27,60],"transformers,":[28],"and":[29,93,193],"their":[30],"combinations":[31],"have":[32],"been":[33,80,184],"proposed":[34],"to":[35,51,132,136,152,160],"segment":[36],"nuclei,":[38],"with":[39,129,177],"positive":[40],"results.":[41],"However,":[42],"these":[43,74],"techniques":[44],"omitted":[45],"a":[46,62,99,107,178],"number":[47],"details":[49],"vital":[50],"simulating":[52],"regional":[54],"appearance":[55],"nucleus":[59],"missing":[61],"high-level":[63],"representation":[64,140],"features":[66,135],"for":[67,171],"location":[68],"dependence":[69],"during":[70],"decoding.":[71],"For":[72],"overcoming":[73],"limitations,":[75],"CellFormer":[77],"network":[78,150],"recommended":[81],"this":[83,203],"research.":[84],"With":[85],"CellFormer,":[86],"an":[87,148,174],"encoder-decoder":[88],"architecture,":[89],"both":[90],"encoder":[92,105],"decoder":[95],"branches":[96],"may":[97],"mimic":[98],"long-range":[100],"knowledge":[101],"semantics.":[103],"The":[104,206],"is":[106,141,147],"compact":[108],"architecture":[109],"built":[110],"transformers":[112],"that":[113,125],"describe":[114],"global":[115,169],"semantic":[116],"linkages":[117],"at":[118],"different":[119],"data":[120,154],"levels.":[121],"An":[122],"AAMC":[123],"module":[124],"we":[126,198,212],"suggested":[127,204],"along":[128],"design":[131],"learn":[133],"advanced":[134],"enhance":[137],"feature":[139],"used":[142],"by":[143],"decoder,":[145],"which":[146],"extended":[149],"topology,":[151],"convey":[153],"from":[155],"decoder.":[157],"In":[158],"order":[159],"improve":[161],"boundaries":[163],"nuclear":[165],"items":[166],"map":[170],"precise":[172],"segmentation,":[173],"MSFB":[175],"block":[176],"novel":[179],"bypass":[180],"connection":[181],"mechanism":[182],"introduced.":[185],"Through":[186],"segmentation":[188],"datasets":[189],"such":[190],"as":[191],"GlaS":[192],"Data":[194],"Science":[195],"Bowl":[196],"2018,":[197],"assess":[199],"performance":[201],"architecture.":[205],"findings":[207],"were":[208],"far":[209],"better":[210],"than":[211],"had":[213],"anticipated":[214],"area":[217],"biomedical":[219],"image":[220],"segmentation.":[221]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
