{"id":"https://openalex.org/W2059702568","doi":"https://doi.org/10.1109/pdp.2008.71","title":"Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services","display_name":"Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services","publication_year":2008,"publication_date":"2008-02-01","ids":{"openalex":"https://openalex.org/W2059702568","doi":"https://doi.org/10.1109/pdp.2008.71","mag":"2059702568"},"language":"en","primary_location":{"id":"doi:10.1109/pdp.2008.71","is_oa":false,"landing_page_url":"https://doi.org/10.1109/pdp.2008.71","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"16th Euromicro Conference on Parallel, Distributed and Network-Based Processing (PDP 2008)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008958321","display_name":"Ale\u0161 K\u0159enek","orcid":"https://orcid.org/0000-0002-3395-3196"},"institutions":[{"id":"https://openalex.org/I54634078","display_name":"CESNET, z\u00e1jmov\u00e9 sdru\u017een\u00ed pr\u00e1vnick\u00fdch osob","ror":"https://ror.org/050dkka69","country_code":"CZ","type":"other","lineage":["https://openalex.org/I54634078"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ales Krenek","raw_affiliation_strings":["CESNET, z. s. p. o., Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CESNET, z. s. p. o., Prague, Czech Republic","institution_ids":["https://openalex.org/I54634078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003945807","display_name":"Martin Pet\u0159ek","orcid":"https://orcid.org/0000-0002-4517-7825"},"institutions":[{"id":"https://openalex.org/I54634078","display_name":"CESNET, z\u00e1jmov\u00e9 sdru\u017een\u00ed pr\u00e1vnick\u00fdch osob","ror":"https://ror.org/050dkka69","country_code":"CZ","type":"other","lineage":["https://openalex.org/I54634078"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Martin Petrek","raw_affiliation_strings":["CESNET, z. s. p. o., Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CESNET, z. s. p. o., Prague, Czech Republic","institution_ids":["https://openalex.org/I54634078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001513578","display_name":"Jan Kmun\u00ed\u010dek","orcid":null},"institutions":[{"id":"https://openalex.org/I54634078","display_name":"CESNET, z\u00e1jmov\u00e9 sdru\u017een\u00ed pr\u00e1vnick\u00fdch osob","ror":"https://ror.org/050dkka69","country_code":"CZ","type":"other","lineage":["https://openalex.org/I54634078"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Kmunicek","raw_affiliation_strings":["CESNET, z. s. p. o., Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CESNET, z. s. p. o., Prague, Czech Republic","institution_ids":["https://openalex.org/I54634078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089216324","display_name":"Ji\u0159\u00ed Filipovi\u010d","orcid":"https://orcid.org/0000-0002-5703-9673"},"institutions":[{"id":"https://openalex.org/I54634078","display_name":"CESNET, z\u00e1jmov\u00e9 sdru\u017een\u00ed pr\u00e1vnick\u00fdch osob","ror":"https://ror.org/050dkka69","country_code":"CZ","type":"other","lineage":["https://openalex.org/I54634078"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jiri Filipovic","raw_affiliation_strings":["CESNET, z. s. p. o., Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CESNET, z. s. p. o., Prague, Czech Republic","institution_ids":["https://openalex.org/I54634078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005471617","display_name":"Zden\u011bk \u0160ustr","orcid":"https://orcid.org/0000-0002-0241-9652"},"institutions":[{"id":"https://openalex.org/I54634078","display_name":"CESNET, z\u00e1jmov\u00e9 sdru\u017een\u00ed pr\u00e1vnick\u00fdch osob","ror":"https://ror.org/050dkka69","country_code":"CZ","type":"other","lineage":["https://openalex.org/I54634078"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Zdenek Sustr","raw_affiliation_strings":["CESNET, z. s. p. o., Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CESNET, z. s. p. o., Prague, Czech Republic","institution_ids":["https://openalex.org/I54634078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089182667","display_name":"Franti\u0161ek Dvo\u0159\u00e1k","orcid":null},"institutions":[{"id":"https://openalex.org/I54634078","display_name":"CESNET, z\u00e1jmov\u00e9 sdru\u017een\u00ed pr\u00e1vnick\u00fdch osob","ror":"https://ror.org/050dkka69","country_code":"CZ","type":"other","lineage":["https://openalex.org/I54634078"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Frantisek Dvorak","raw_affiliation_strings":["CESNET, z. s. p. o., Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CESNET, z. s. p. o., Prague, Czech Republic","institution_ids":["https://openalex.org/I54634078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078619456","display_name":"Ji\u0159\u00ed Sitera","orcid":null},"institutions":[{"id":"https://openalex.org/I54634078","display_name":"CESNET, z\u00e1jmov\u00e9 sdru\u017een\u00ed pr\u00e1vnick\u00fdch osob","ror":"https://ror.org/050dkka69","country_code":"CZ","type":"other","lineage":["https://openalex.org/I54634078"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jiri Sitera","raw_affiliation_strings":["CESNET, z. s. p. o., Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CESNET, z. s. p. o., Prague, Czech Republic","institution_ids":["https://openalex.org/I54634078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013826706","display_name":"Ji\u0159\u00ed Wiesner","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jiri Wiesner","raw_affiliation_strings":["NCBR, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NCBR, Brno, Czech Republic","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005207700","display_name":"Lud\u011bk Matyska","orcid":"https://orcid.org/0000-0001-6399-5453"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ludek Matyska","raw_affiliation_strings":["NCBR, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NCBR, Brno, Czech Republic","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5092,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.55413131,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"447","last_page":"454"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9728000164031982,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7747623920440674},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6203516721725464},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5734887719154358},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.5417190194129944},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5367540121078491},{"id":"https://openalex.org/keywords/active-site","display_name":"Active site","score":0.4552440047264099},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.43913209438323975},{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.43781623244285583},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4350889325141907},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.4246790111064911},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.21686500310897827},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.15680265426635742},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14286330342292786},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11321082711219788},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09028828144073486}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7747623920440674},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6203516721725464},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5734887719154358},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.5417190194129944},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5367540121078491},{"id":"https://openalex.org/C41183919","wikidata":"https://www.wikidata.org/wiki/Q423026","display_name":"Active site","level":3,"score":0.4552440047264099},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.43913209438323975},{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.43781623244285583},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4350889325141907},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.4246790111064911},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.21686500310897827},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.15680265426635742},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14286330342292786},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11321082711219788},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09028828144073486},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/pdp.2008.71","is_oa":false,"landing_page_url":"https://doi.org/10.1109/pdp.2008.71","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"16th Euromicro Conference on Parallel, Distributed and Network-Based Processing (PDP 2008)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1809943808","https://openalex.org/W2029667189","https://openalex.org/W2163486103","https://openalex.org/W2490190470","https://openalex.org/W2599250154","https://openalex.org/W2604266134"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W1528942931","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W188202134","https://openalex.org/W4255934811","https://openalex.org/W2004834660"],"abstract_inverted_index":{"Interactions":[0],"between":[1],"large":[2],"biomolecules":[3],"and":[4,82,96,107,115],"smaller":[5],"bio-active":[6],"ligands":[7,95],"are":[8],"usually":[9],"studied":[10],"through":[11],"a":[12,26,76,85],"process":[13],"called":[14],"docking.":[15],"Its":[16],"aim":[17],"is":[18,46,63],"to":[19,48],"find":[20],"an":[21,29,58],"energetically":[22],"favorable":[23],"orientation":[24],"of":[25,32,43,84,88,94],"ligand":[27,45],"within":[28],"active":[30,39],"site":[31],"abiomolecule.":[33],"Chemical":[34],"reactions":[35],"take":[36],"place":[37],"in":[38,103],"siteand":[40],"the":[41,44,55,111,121],"role":[42],"either":[47],"speed":[49],"up,":[50],"slow":[51],"down":[52],"or":[53,70],"change":[54],"reaction":[56],"(e.g.,":[57],"enzyme":[59],"catalyzed":[60],"hydrolysis),":[61],"which":[62],"why":[64],"it":[65],"can":[66,100],"have":[67],"huge":[68],"pharmaceutical":[69],"other":[71],"commercial":[72],"impact.":[73],"We":[74],"present":[75],"tool":[77],"that":[78],"supports":[79,113],"effective":[80],"management":[81],"control":[83],"typical":[86],"workflow":[87],"docking":[89],"parametric":[90],"study.":[91],"Selected":[92],"subsets":[93],"protein":[97],"trajectory":[98],"snapshots":[99],"be":[101],"displayed":[102],"three":[104],"different":[105],"views":[106],"further":[108],"analyzed.":[109],"Finally,":[110],"application":[112],"spawning":[114],"steering":[116],"underlying":[117],"computations":[118],"running":[119],"on":[120],"Grid.":[122]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
