{"id":"https://openalex.org/W7140804932","doi":"https://doi.org/10.1109/ojcoms.2026.3677114","title":"A Survey on the Coding for DNA Storage: Challenges, Algorithms, and Future Directions","display_name":"A Survey on the Coding for DNA Storage: Challenges, Algorithms, and Future Directions","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7140804932","doi":"https://doi.org/10.1109/ojcoms.2026.3677114"},"language":"en","primary_location":{"id":"doi:10.1109/ojcoms.2026.3677114","is_oa":true,"landing_page_url":"https://doi.org/10.1109/ojcoms.2026.3677114","pdf_url":null,"source":{"id":"https://openalex.org/S4210202420","display_name":"IEEE Open Journal of the Communications Society","issn_l":"2644-125X","issn":["2644-125X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310316002","host_organization_name":"IEEE Communications Society","host_organization_lineage":["https://openalex.org/P4310316002","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Communications Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Open Journal of the Communications Society","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/ojcoms.2026.3677114","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5130692076","display_name":"Liwei Mu","orcid":null},"institutions":[{"id":"https://openalex.org/I187400657","display_name":"South China Normal University","ror":"https://ror.org/01kq0pv72","country_code":"CN","type":"education","lineage":["https://openalex.org/I187400657"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liwei Mu","raw_affiliation_strings":["School of Electronic Science and Engineering (School of Microelectronics), South China Normal University, Foshan, China"],"raw_orcid":"https://orcid.org/0000-0002-5470-1799","affiliations":[{"raw_affiliation_string":"School of Electronic Science and Engineering (School of Microelectronics), South China Normal University, Foshan, China","institution_ids":["https://openalex.org/I187400657"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ling Liu","orcid":"https://orcid.org/0009-0009-0954-6986"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Liu","raw_affiliation_strings":["Guangzhou Institute of Technology, Xidian University, Guangzhou, China"],"raw_orcid":"https://orcid.org/0009-0009-0954-6986","affiliations":[{"raw_affiliation_string":"Guangzhou Institute of Technology, Xidian University, Guangzhou, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033964762","display_name":"Lulu Ding","orcid":"https://orcid.org/0000-0001-8992-5541"},"institutions":[{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lulu Ding","raw_affiliation_strings":["School of Artificial Intelligence, National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I4210152380"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052762681","display_name":"Zexuan Zhu","orcid":"https://orcid.org/0000-0001-8479-6904"},"institutions":[{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zexuan Zhu","raw_affiliation_strings":["School of Artificial Intelligence, National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0001-8479-6904","affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I4210152380"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5130692076"],"corresponding_institution_ids":["https://openalex.org/I187400657"],"apc_list":{"value":1750,"currency":"USD","value_usd":1750},"apc_paid":{"value":1750,"currency":"USD","value_usd":1750},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.60019482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"7","issue":null,"first_page":"3528","last_page":"3558"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5447999835014343},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.44600000977516174},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.32760000228881836},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.3012000024318695},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.29249998927116394}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5586000084877014},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5447999835014343},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.44600000977516174},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37610000371932983},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.32760000228881836},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.3012000024318695},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2939999997615814},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.29249998927116394},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2689000070095062},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2565999925136566}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/ojcoms.2026.3677114","is_oa":true,"landing_page_url":"https://doi.org/10.1109/ojcoms.2026.3677114","pdf_url":null,"source":{"id":"https://openalex.org/S4210202420","display_name":"IEEE Open Journal of the Communications Society","issn_l":"2644-125X","issn":["2644-125X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310316002","host_organization_name":"IEEE Communications Society","host_organization_lineage":["https://openalex.org/P4310316002","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Communications Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Open Journal of the Communications Society","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:d193cc94f3af403e898b577cb9459dbd","is_oa":true,"landing_page_url":"https://doaj.org/article/d193cc94f3af403e898b577cb9459dbd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Open Journal of the Communications Society, Vol 7, Pp 3528-3558 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/ojcoms.2026.3677114","is_oa":true,"landing_page_url":"https://doi.org/10.1109/ojcoms.2026.3677114","pdf_url":null,"source":{"id":"https://openalex.org/S4210202420","display_name":"IEEE Open Journal of the Communications Society","issn_l":"2644-125X","issn":["2644-125X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310316002","host_organization_name":"IEEE Communications Society","host_organization_lineage":["https://openalex.org/P4310316002","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Communications Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Open Journal of the Communications Society","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6276227692","display_name":null,"funder_award_id":"62471310","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6990284115","display_name":null,"funder_award_id":"2022A1515010942","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"},{"id":"https://openalex.org/G7832799632","display_name":null,"funder_award_id":"32401256","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G949662064","display_name":null,"funder_award_id":"62571401","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"DNA-based":[0],"data":[1,55,209],"storage":[2,104,150,210],"has":[3,29],"developed":[4],"rapidly":[5],"in":[6,102],"recent":[7],"years":[8],"and":[9,41,62,70,75,95,119,126,154,166,175,178,191,201],"is":[10],"increasingly":[11],"viewed":[12],"as":[13,90,131],"a":[14,31,47],"promising":[15],"solution":[16],"for":[17,53,100,114,182,206],"long-term,":[18],"ultra-dense":[19],"archival":[20],"storage.":[21,56],"As":[22],"research":[23,193],"moves":[24],"beyond":[25],"early":[26],"demonstrations,":[27],"encoding":[28,81,160,204],"become":[30],"central":[32],"technical":[33],"challenge":[34],"that":[35],"directly":[36],"affects":[37],"system":[38],"reliability,":[39],"scalability,":[40],"practical":[42,180],"deployment.":[43],"This":[44],"survey":[45,138,170],"presents":[46],"structured":[48],"overview":[49],"of":[50,65,198],"coding":[51,110,124,141],"techniques":[52,205],"DNA":[54,66,115,208],"We":[57,83],"first":[58],"outline":[59],"the":[60,137,196],"biochemical":[61,127,152],"structural":[63,155],"constraints":[64],"storage,":[67,116],"including":[68,117],"synthesis":[69],"sequencing":[71],"errors,":[72],"molecular":[73,103],"instability,":[74],"context-dependent":[76],"biases,":[77],"which":[78],"strongly":[79],"influence":[80],"design.":[82],"then":[84],"review":[85],"how":[86],"classical":[87],"error-correcting":[88],"codes\u2014such":[89],"Reed\u2013Solomon,":[91],"BCH,":[92],"convolutional,":[93],"fountain,":[94],"LDPC":[96],"codes\u2014have":[97],"been":[98],"adapted":[99],"use":[101],"systems.":[105,211],"Next,":[106],"we":[107,187],"introduce":[108],"emerging":[109],"approaches":[111],"designed":[112],"specifically":[113],"ALD":[118],"Damerau":[120],"distance":[121],"codes,":[122],"set-based":[123],"models,":[125],"rule\u2013guided":[128],"methods":[129],"such":[130],"Yin\u2013Yang":[132],"coding.":[133],"Beyond":[134],"error":[135],"correction,":[136],"also":[139],"examines":[140],"strategies":[142],"aimed":[143],"at":[144],"improving":[145],"efficiency,":[146],"with":[147],"attention":[148],"to":[149],"rate,":[151],"feasibility,":[153],"robustness.":[156],"By":[157],"comparing":[158],"representative":[159],"schemes":[161],"across":[162],"different":[163],"channel":[164],"conditions":[165],"application":[167],"scenarios,":[168],"this":[169],"summarizes":[171],"existing":[172],"theoretical":[173],"analyses":[174],"experimental":[176],"results":[177],"provides":[179],"guidance":[181],"selecting":[183],"suitable":[184],"codes.":[185],"Finally,":[186],"discuss":[188],"open":[189],"challenges":[190],"future":[192],"directions,":[194],"highlighting":[195],"potential":[197],"adaptive,":[199],"secure,":[200],"machine":[202],"learning\u2013assisted":[203],"large-scale":[207]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2026-03-27T00:00:00"}
