{"id":"https://openalex.org/W1982662510","doi":"https://doi.org/10.1109/msp.2014.2344552","title":"Snakes on a Plane: A perfect snap for bioimage analysis","display_name":"Snakes on a Plane: A perfect snap for bioimage analysis","publication_year":2014,"publication_date":"2014-12-06","ids":{"openalex":"https://openalex.org/W1982662510","doi":"https://doi.org/10.1109/msp.2014.2344552","mag":"1982662510"},"language":"en","primary_location":{"id":"doi:10.1109/msp.2014.2344552","is_oa":false,"landing_page_url":"https://doi.org/10.1109/msp.2014.2344552","pdf_url":null,"source":{"id":"https://openalex.org/S120977877","display_name":"IEEE Signal Processing Magazine","issn_l":"1053-5888","issn":["1053-5888","1558-0792"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Signal Processing Magazine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/205429","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015631143","display_name":"Ricard Delgado-Gonzalo","orcid":"https://orcid.org/0000-0002-7183-6257"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Ricard Delgado-Gonzalo","raw_affiliation_strings":["Ecole Polytechnique Federale de Lausanne, Lausanne, VD, CH","[Laboratoire d\u02bcimagerie biom\u00e9dicale, Ecole polytechnique federale de Lausanne (EPFL), Lausanne, 1015 Vaud, Switzerland]"],"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique Federale de Lausanne, Lausanne, VD, CH","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"[Laboratoire d\u02bcimagerie biom\u00e9dicale, Ecole polytechnique federale de Lausanne (EPFL), Lausanne, 1015 Vaud, Switzerland]","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034638851","display_name":"Virginie Uhlmann","orcid":"https://orcid.org/0000-0002-2859-9241"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Virginie Uhlmann","raw_affiliation_strings":["Ecole Polytechnique Federale de Lausanne, Lausanne, VD, CH","[Laboratoire d\u02bcimagerie biom\u00e9dicale, Ecole polytechnique federale de Lausanne (EPFL), Lausanne, 1015 Vaud, Switzerland]"],"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique Federale de Lausanne, Lausanne, VD, CH","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"[Laboratoire d\u02bcimagerie biom\u00e9dicale, Ecole polytechnique federale de Lausanne (EPFL), Lausanne, 1015 Vaud, Switzerland]","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010972561","display_name":"Daniel Schmitter","orcid":null},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Daniel Schmitter","raw_affiliation_strings":["Ecole Polytechnique Federale de Lausanne, Lausanne, VD, CH","[Laboratoire d\u02bcimagerie biom\u00e9dicale, Ecole polytechnique federale de Lausanne (EPFL), Lausanne, 1015 Vaud, Switzerland]"],"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique Federale de Lausanne, Lausanne, VD, CH","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"[Laboratoire d\u02bcimagerie biom\u00e9dicale, Ecole polytechnique federale de Lausanne (EPFL), Lausanne, 1015 Vaud, Switzerland]","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027830035","display_name":"Micha\u00ebl Unser","orcid":"https://orcid.org/0000-0003-1248-2513"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michael Unser","raw_affiliation_strings":["Ecole Polytechnique Federale de Lausanne, Lausanne, VD, CH","[Laboratoire d\u02bcimagerie biom\u00e9dicale, Ecole polytechnique federale de Lausanne (EPFL), Lausanne, 1015 Vaud, Switzerland]"],"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique Federale de Lausanne, Lausanne, VD, CH","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"[Laboratoire d\u02bcimagerie biom\u00e9dicale, Ecole polytechnique federale de Lausanne (EPFL), Lausanne, 1015 Vaud, Switzerland]","institution_ids":["https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5015631143"],"corresponding_institution_ids":["https://openalex.org/I5124864"],"apc_list":null,"apc_paid":null,"fwci":11.648,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.98303688,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"32","issue":"1","first_page":"41","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7680740356445312},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47627586126327515},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.43790942430496216},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.43722784519195557},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4370507001876831},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.4328674077987671},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4289887249469757},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.42398107051849365},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3460378646850586},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33615463972091675},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.22657719254493713},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.099749356508255}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7680740356445312},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47627586126327515},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.43790942430496216},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.43722784519195557},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4370507001876831},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.4328674077987671},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4289887249469757},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.42398107051849365},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3460378646850586},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33615463972091675},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.22657719254493713},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.099749356508255},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/msp.2014.2344552","is_oa":false,"landing_page_url":"https://doi.org/10.1109/msp.2014.2344552","pdf_url":null,"source":{"id":"https://openalex.org/S120977877","display_name":"IEEE Signal Processing Magazine","issn_l":"1053-5888","issn":["1053-5888","1558-0792"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Signal Processing Magazine","raw_type":"journal-article"},{"id":"pmh:oai:infoscience.epfl.ch:205429","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/205429","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:infoscience.epfl.ch:205429","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/205429","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320314070","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142"},{"id":"https://openalex.org/F4320320915","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052"},{"id":"https://openalex.org/F4320328447","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1498489758","https://openalex.org/W1518341281","https://openalex.org/W1791798871","https://openalex.org/W1848128111","https://openalex.org/W1851836921","https://openalex.org/W1968267045","https://openalex.org/W1968615915","https://openalex.org/W1971354237","https://openalex.org/W1975612142","https://openalex.org/W1991113069","https://openalex.org/W2002882465","https://openalex.org/W2003410902","https://openalex.org/W2007035646","https://openalex.org/W2032488764","https://openalex.org/W2037947871","https://openalex.org/W2044203676","https://openalex.org/W2050402365","https://openalex.org/W2075650606","https://openalex.org/W2079130919","https://openalex.org/W2086921140","https://openalex.org/W2088483605","https://openalex.org/W2092230235","https://openalex.org/W2098408658","https://openalex.org/W2098715428","https://openalex.org/W2099540110","https://openalex.org/W2099753963","https://openalex.org/W2104028907","https://openalex.org/W2104095591","https://openalex.org/W2109820484","https://openalex.org/W2116040950","https://openalex.org/W2118345904","https://openalex.org/W2118891573","https://openalex.org/W2120659763","https://openalex.org/W2122827492","https://openalex.org/W2126608037","https://openalex.org/W2131141154","https://openalex.org/W2135853930","https://openalex.org/W2136893947","https://openalex.org/W2137501646","https://openalex.org/W2141594707","https://openalex.org/W2145803225","https://openalex.org/W2148107745","https://openalex.org/W2149184914","https://openalex.org/W2151158938","https://openalex.org/W2155343350","https://openalex.org/W2157878716","https://openalex.org/W2158642611","https://openalex.org/W2158939069","https://openalex.org/W2159808795","https://openalex.org/W2166500461","https://openalex.org/W2167279371","https://openalex.org/W2167354555","https://openalex.org/W2168792832","https://openalex.org/W2294282334","https://openalex.org/W3011413250","https://openalex.org/W3211330693","https://openalex.org/W4243966075","https://openalex.org/W6629802309"],"related_works":["https://openalex.org/W25697772","https://openalex.org/W1594752393","https://openalex.org/W2288407873","https://openalex.org/W4211107619","https://openalex.org/W2377505912","https://openalex.org/W2504161237","https://openalex.org/W3028614290","https://openalex.org/W3038016773","https://openalex.org/W2393723275","https://openalex.org/W4380482928"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"there":[3],"has":[4,51,90],"been":[5,91],"an":[6],"increasing":[7],"interest":[8],"in":[9,64,81,196,247],"getting":[10],"a":[11,177],"proper":[12],"quantitative":[13,76,165],"understanding":[14],"of":[15,23,27,39,62,68,84,96,112,124,129,158,164,168,173,182,191,200,206],"cellular":[16],"and":[17,66,87,110,188,210,230,244],"molecular":[18],"processes":[19],"[1],":[20],"[2].":[21],"One":[22],"the":[24,36,54,82,94,108,143,156,169,183,192,197,227,236],"major":[25,178],"challenges":[26],"current":[28],"biomedical":[29,159],"research":[30],"is":[31,106,186,189,215],"to":[32,53,122,131,223,226,233,253],"characterize":[33],"not":[34],"only":[35],"spatial":[37],"organization":[38],"these":[40],"complex":[41],"systems":[42],"but":[43],"also":[44],"their":[45],"spatiotemporal":[46],"relationships":[47],"[3],":[48],"[4].":[49],"Microscopy":[50],"matured":[52],"point":[55],"that":[56,107,238],"it":[57],"enables":[58],"sensitive":[59],"time-lapse":[60],"imaging":[61,228],"cells":[63,239],"vivo":[65],"even":[67],"single":[69],"molecules":[70],"[5],":[71],"[6].":[72],"Making":[73],"microscopy":[74],"more":[75],"brings":[77],"important":[78],"scientific":[79],"benefits":[80],"form":[83],"improved":[85],"performance":[86],"reproducibility.":[88],"This":[89],"fostered":[92],"by":[93],"development":[95,181],"technological":[97],"achievements":[98],"such":[99],"as":[100],"high-throughput":[101],"microscopy.":[102],"A":[103,218],"direct":[104],"consequence":[105],"size":[109],"complexity":[111],"image":[113],"data":[114,136,175],"are":[115],"increasing.":[116],"Time-lapse":[117],"experiments":[118],"commonly":[119],"generate":[120],"hundreds":[121,128],"thousands":[123,205],"images,":[125],"each":[126],"containing":[127],"objects":[130,209],"be":[132,139,147,224,241],"analyzed":[133,140],"[7].":[134],"These":[135],"often":[137],"cannot":[138],"manually":[141],"because":[142],"manpower":[144],"required":[145],"would":[146],"too":[148],"extensive,":[149],"which":[150],"calls":[151],"for":[152,155],"automated":[153],"methods":[154],"analysis":[157],"images.":[160],"Such":[161],"computerized":[162],"extraction":[163],"information":[166],"out":[167],"rapidly":[170],"expanding":[171],"amount":[172],"acquired":[174],"remains":[176],"challenge.":[179],"The":[180],"related":[184],"algorithms":[185],"nontrivial":[187],"one":[190],"most":[193],"active":[194],"fronts":[195],"new":[198],"field":[199],"bioimage":[201],"informatics":[202],"[8]?[11].":[203],"Segmenting":[204],"individual":[207],"biological":[208],"tracking":[211],"them":[212,251],"over":[213],"time":[214],"remarkably":[216],"difficult.":[217],"typical":[219],"algorithm":[220],"will":[221,231],"need":[222],"tuned":[225],"modality":[229],"have":[232],"cope":[234],"with":[235],"fact":[237],"can":[240],"tightly":[242],"packed":[243],"may":[245],"appear":[246],"various":[248],"configurations,":[249],"making":[250],"difficult":[252],"segregate.":[254]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
