{"id":"https://openalex.org/W2151092359","doi":"https://doi.org/10.1109/mmse.2003.1254454","title":"Design of an incremental clustering package for protein function and family analysis","display_name":"Design of an incremental clustering package for protein function and family analysis","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2151092359","doi":"https://doi.org/10.1109/mmse.2003.1254454","mag":"2151092359"},"language":"en","primary_location":{"id":"doi:10.1109/mmse.2003.1254454","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mmse.2003.1254454","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fifth International Symposium on Multimedia Software Engineering, 2003. Proceedings.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100710720","display_name":"Chien\u2010Yu Chen","orcid":"https://orcid.org/0000-0002-6940-6389"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chien-Yu Chen","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052313712","display_name":"Hsueh\u2010Fen Juan","orcid":"https://orcid.org/0000-0003-4876-3309"},"institutions":[{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hsueh-Fen Juan","raw_affiliation_strings":["Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110255648","display_name":"Po-Jen Hsiao","orcid":null},"institutions":[{"id":"https://openalex.org/I118292597","display_name":"National Taipei University of Technology","ror":"https://ror.org/00cn92c09","country_code":"TW","type":"education","lineage":["https://openalex.org/I118292597"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Po-Jen Hsiao","raw_affiliation_strings":["Department of Chemical Engineering, National Taipei University of Technology, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, National Taipei University of Technology, Taipei, Taiwan","institution_ids":["https://openalex.org/I118292597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112036011","display_name":"Shui\u2010Tein Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I96323854","display_name":"National Yang Ming Chiao Tung University","ror":null,"country_code":"TW","type":null,"lineage":["https://openalex.org/I96323854"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Shui-Tein Chen","raw_affiliation_strings":["Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan","Institute of Pharmacology, National Yang-Ming University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384"]},{"raw_affiliation_string":"Institute of Pharmacology, National Yang-Ming University, Taipei, Taiwan","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I96323854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071775718","display_name":"Hsiang\u2010Wen Tseng","orcid":"https://orcid.org/0000-0001-8459-6347"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hsiang-Wen Tseng","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025555646","display_name":"Yen\u2010Jen Oyang","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yen-Jen Oyang","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15856419,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"29","issue":null,"first_page":"288","last_page":"296"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.862980306148529},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7082628011703491},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5514203906059265},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.5379348993301392},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.42619380354881287},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.257174015045166},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06319281458854675}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.862980306148529},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7082628011703491},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5514203906059265},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.5379348993301392},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.42619380354881287},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.257174015045166},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06319281458854675},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/mmse.2003.1254454","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mmse.2003.1254454","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fifth International Symposium on Multimedia Software Engineering, 2003. Proceedings.","raw_type":"proceedings-article"},{"id":"pmh:oai:140.112.114.62:246246/200704191002926","is_oa":false,"landing_page_url":"http://ntur.lib.ntu.edu.tw//handle/246246/200704191002926","pdf_url":null,"source":{"id":"https://openalex.org/S4306402491","display_name":"NTUR (\u81fa\u7063\u6a5f\u69cb\u5178\u85cf)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16733864","host_organization_name":"National Taiwan University","host_organization_lineage":["https://openalex.org/I16733864"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1660390307","https://openalex.org/W1992419399","https://openalex.org/W2003144438","https://openalex.org/W2038898159","https://openalex.org/W2056046997","https://openalex.org/W2146827656","https://openalex.org/W2153294290","https://openalex.org/W2158714788","https://openalex.org/W2168514491","https://openalex.org/W3148116038","https://openalex.org/W4205939273","https://openalex.org/W4213149192"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W3200375535"],"abstract_inverted_index":{"Protein":[0],"clustering":[1,23,46,55,76,84,119],"has":[2],"been":[3],"widely":[4,116],"exploited":[5],"to":[6,86,97,132],"facilitate":[7],"in-depth":[8],"analysis":[9,61,89],"of":[10,19,53,62,75],"protein":[11,22,30,45,65,87,99,104,122],"functions":[12],"and":[13,32],"families.":[14],"We":[15,125],"discuss":[16],"the":[17,36,54,73,82,92,109,114,128,134],"design":[18],"an":[20],"incremental":[21,51,83,93],"package":[24,37],"that":[25,91,102],"provides":[26],"comprehensive":[27],"features":[28],"for":[29,41,59,121],"function":[31],"family":[33],"analysis.":[34,124],"Specifically,":[35],"offers":[38],"alternative":[39],"options":[40],"carrying":[42],"out":[43],"high-quality":[44],"from":[47,80],"different":[48],"aspects.":[49],"The":[50],"nature":[52],"algorithm":[56,85,94,120],"is":[57,95,113],"essential":[58],"efficient":[60],"those":[63],"contemporary":[64],"databases":[66],"whose":[67],"sizes":[68],"are":[69],"growing":[70],"rapidly.":[71],"Concerning":[72],"quality":[74],"results,":[77],"experimental":[78],"results":[79],"applying":[81],"sequence":[88,100,123],"show":[90],"able":[96],"identify":[98],"clusters":[101],"match":[103],"families":[105],"more":[106],"consistently":[107],"than":[108],"single-link":[110],"algorithm,":[111],"which":[112],"most":[115],"used":[117],"hierarchical":[118],"also":[126],"address":[127],"implementation":[129],"techniques":[130],"employed":[131],"improve":[133],"system":[135],"performance.":[136]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
