{"id":"https://openalex.org/W2775663132","doi":"https://doi.org/10.1109/mlsp.2017.8168186","title":"A deep neural network witharestricted noisy channel for identification of functional introns","display_name":"A deep neural network witharestricted noisy channel for identification of functional introns","publication_year":2017,"publication_date":"2017-09-01","ids":{"openalex":"https://openalex.org/W2775663132","doi":"https://doi.org/10.1109/mlsp.2017.8168186","mag":"2775663132"},"language":"en","primary_location":{"id":"doi:10.1109/mlsp.2017.8168186","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mlsp.2017.8168186","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE 27th International Workshop on Machine Learning for Signal Processing (MLSP)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038570430","display_name":"Alan Joseph Bekker","orcid":null},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Alan Joseph Bekker","raw_affiliation_strings":["Engineering Faculty, Bar-Ilan University, Israel"],"affiliations":[{"raw_affiliation_string":"Engineering Faculty, Bar-Ilan University, Israel","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023081891","display_name":"Michal Chorev","orcid":"https://orcid.org/0000-0003-3533-2913"},"institutions":[{"id":"https://openalex.org/I4210167297","display_name":"IBM Research - Haifa","ror":"https://ror.org/05rw9t746","country_code":"IL","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210167297"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Michal Chorev","raw_affiliation_strings":["IBM Research-Haifa, Israel"],"affiliations":[{"raw_affiliation_string":"IBM Research-Haifa, Israel","institution_ids":["https://openalex.org/I4210167297"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025997249","display_name":"Liran Carmel","orcid":"https://orcid.org/0000-0003-0225-8550"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Liran Carmel","raw_affiliation_strings":["Department of Genetics, The Hebrew University of Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, The Hebrew University of Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005409420","display_name":"Jacob Goldberger","orcid":"https://orcid.org/0000-0002-2225-1914"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Jacob Goldberger","raw_affiliation_strings":["Engineering Faculty, Bar-Ilan University, Israel"],"affiliations":[{"raw_affiliation_string":"Engineering Faculty, Bar-Ilan University, Israel","institution_ids":["https://openalex.org/I13955877"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5038570430"],"corresponding_institution_ids":["https://openalex.org/I13955877"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.14905829,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.8688968420028687},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5310761332511902},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5208995342254639},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5080838203430176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4911632239818573},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.46776220202445984},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4564497470855713},{"id":"https://openalex.org/keywords/fraction","display_name":"Fraction (chemistry)","score":0.4552038013935089},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44252240657806396},{"id":"https://openalex.org/keywords/maximization","display_name":"Maximization","score":0.4215857982635498},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.41506391763687134},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4070051610469818},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39065539836883545},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3363295793533325},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2856155335903168},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2580918073654175},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2454192042350769},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.09012174606323242},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07076957821846008}],"concepts":[{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.8688968420028687},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5310761332511902},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5208995342254639},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5080838203430176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4911632239818573},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.46776220202445984},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4564497470855713},{"id":"https://openalex.org/C149629883","wikidata":"https://www.wikidata.org/wiki/Q660926","display_name":"Fraction (chemistry)","level":2,"score":0.4552038013935089},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44252240657806396},{"id":"https://openalex.org/C2776330181","wikidata":"https://www.wikidata.org/wiki/Q18358244","display_name":"Maximization","level":2,"score":0.4215857982635498},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.41506391763687134},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4070051610469818},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39065539836883545},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3363295793533325},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2856155335903168},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2580918073654175},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2454192042350769},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.09012174606323242},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07076957821846008},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/mlsp.2017.8168186","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mlsp.2017.8168186","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE 27th International Workshop on Machine Learning for Signal Processing (MLSP)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W72116547","https://openalex.org/W1999334232","https://openalex.org/W2049633694","https://openalex.org/W2065505409","https://openalex.org/W2095903770","https://openalex.org/W2108933033","https://openalex.org/W2113290770","https://openalex.org/W2123921145","https://openalex.org/W2128896349","https://openalex.org/W2145494108","https://openalex.org/W2167460663","https://openalex.org/W2252268321","https://openalex.org/W2293363371","https://openalex.org/W2403681572","https://openalex.org/W2752971446","https://openalex.org/W2963028646","https://openalex.org/W6677082149","https://openalex.org/W6681588610","https://openalex.org/W6743885473"],"related_works":["https://openalex.org/W3139555495","https://openalex.org/W2103026185","https://openalex.org/W2046677216","https://openalex.org/W2072863028","https://openalex.org/W2045666137","https://openalex.org/W2112884159","https://openalex.org/W2019966612","https://openalex.org/W3029098147","https://openalex.org/W2281029094","https://openalex.org/W1990938380"],"abstract_inverted_index":{"An":[0],"appreciable":[1],"fraction":[2,81],"of":[3,49,82,112,137,152],"introns":[4,50,64,83,140,154],"is":[5,15,24,39,66,77,90,95],"thought":[6],"to":[7,19,26,78],"be":[8,27],"involved":[9],"in":[10],"cellular":[11],"functions,":[12],"but":[13],"there":[14],"no":[16],"obvious":[17],"way":[18],"predict":[20],"which":[21],"specific":[22],"intron":[23,31,94],"likely":[25,88],"functional.":[28,60,96,156],"For":[29,45,61],"each":[30,92],"we":[32,51],"are":[33,52,59,71,84,125,141,155],"given":[34,54,106],"a":[35,46,99,116,150],"feature":[36],"representation":[37],"that":[38,57,91,103,134,148],"based":[40],"on":[41],"its":[42],"evolutionary":[43],"patterns.":[44],"small":[47],"subsets":[48],"also":[53],"an":[55],"indication":[56],"they":[58,70],"all":[62,153],"other":[63],"it":[65,89],"not":[67,143],"known":[68],"whether":[69],"functional":[72,85,139],"or":[73],"not.":[74],"Our":[75],"task":[76],"estimate":[79],"what":[80],"and,":[86],"how":[87],"individual":[93],"We":[97,132],"define":[98],"probabilistic":[100],"classification":[101],"model":[102,123],"treats":[104],"the":[105,129,138],"functionality":[107],"labels":[108,113],"as":[109,145],"noisy":[110],"versions":[111],"created":[114],"by":[115,127],"Deep":[117],"Neural":[118],"Network":[119],"model.":[120],"The":[121],"maximum-likelihood":[122],"parameters":[124],"found":[126],"utilizing":[128],"Expectation-Maximization":[130],"algorithm.":[131],"show":[133],"roughly":[135,149],"80%":[136],"still":[142],"recognized":[144],"such,":[146],"and":[147],"third":[151]},"counts_by_year":[{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
