{"id":"https://openalex.org/W2106181875","doi":"https://doi.org/10.1109/mlsp.2011.6064613","title":"Protein subcellular localization prediction based on profile alignment and Gene Ontology","display_name":"Protein subcellular localization prediction based on profile alignment and Gene Ontology","publication_year":2011,"publication_date":"2011-09-01","ids":{"openalex":"https://openalex.org/W2106181875","doi":"https://doi.org/10.1109/mlsp.2011.6064613","mag":"2106181875"},"language":"en","primary_location":{"id":"doi:10.1109/mlsp.2011.6064613","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mlsp.2011.6064613","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Workshop on Machine Learning for Signal Processing","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065053020","display_name":"Shibiao Wan","orcid":"https://orcid.org/0000-0003-0661-2684"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Shibiao Wan","raw_affiliation_strings":["Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong, China","Dept. of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"Dept. of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, China","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068768998","display_name":"Man\u2010Wai Mak","orcid":"https://orcid.org/0000-0001-8854-3760"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Man-Wai Mak","raw_affiliation_strings":["Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong, China","Dept. of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"Dept. of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, China","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072714962","display_name":"Sun\u2010Yuan Kung","orcid":"https://orcid.org/0000-0002-7314-0720"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sun-Yuan Kung","raw_affiliation_strings":["Department of Electrical Engineering, Princeton University, NJ, USA","[Department of Electrical Engineering, Princeton University, New Jersey, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Princeton University, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"[Department of Electrical Engineering, Princeton University, New Jersey, USA]","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.8196364641189575},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7669677734375},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6674108505249023},{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.6430370807647705},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5687119960784912},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5064133405685425},{"id":"https://openalex.org/keywords/feature-vector","display_name":"Feature vector","score":0.43908604979515076},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.43043795228004456},{"id":"https://openalex.org/keywords/protein-subcellular-localization-prediction","display_name":"Protein subcellular localization prediction","score":0.43037623167037964},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.41217127442359924},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.41201093792915344},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38448190689086914},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3814168870449066},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35242027044296265},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25926774740219116},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14680203795433044},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11961764097213745},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06634345650672913}],"concepts":[{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.8196364641189575},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7669677734375},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6674108505249023},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.6430370807647705},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5687119960784912},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5064133405685425},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.43908604979515076},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.43043795228004456},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.43037623167037964},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.41217127442359924},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.41201093792915344},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38448190689086914},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3814168870449066},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35242027044296265},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25926774740219116},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14680203795433044},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11961764097213745},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06634345650672913},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/mlsp.2011.6064613","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mlsp.2011.6064613","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Workshop on Machine Learning for Signal Processing","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.220.7270","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.220.7270","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.eie.polyu.edu.hk/%7Emwmak/papers/mlsp11.pdf","raw_type":"text"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/30229","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/30229","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1491250132","https://openalex.org/W1979975413","https://openalex.org/W2027262652","https://openalex.org/W2033588290","https://openalex.org/W2036248751","https://openalex.org/W2053963319","https://openalex.org/W2069389043","https://openalex.org/W2082605863","https://openalex.org/W2089047063","https://openalex.org/W2109553965","https://openalex.org/W2110659301","https://openalex.org/W2124306486","https://openalex.org/W2127103767","https://openalex.org/W2145957695","https://openalex.org/W2151790371","https://openalex.org/W2152458080","https://openalex.org/W2158714788","https://openalex.org/W2169043568","https://openalex.org/W2170700642","https://openalex.org/W6645139511"],"related_works":["https://openalex.org/W2351398203","https://openalex.org/W4205775722","https://openalex.org/W4366498163","https://openalex.org/W2402975874","https://openalex.org/W3215969703","https://openalex.org/W4389024241","https://openalex.org/W1966526845","https://openalex.org/W166669457","https://openalex.org/W2378433676","https://openalex.org/W2085255321"],"abstract_inverted_index":{"The":[0,48,73,92],"functions":[1],"of":[2,46,114],"proteins":[3],"are":[4,13,56,67,99],"closely":[5],"related":[6],"to":[7,15,41,69,79,101],"their":[8,65],"subcellular":[9,44],"locations.":[10],"Computational":[11],"methods":[12,33,40,55,98,103,117],"required":[14],"replace":[16],"the":[17,43,81,86,96,112,120],"laborious":[18],"and":[19,34,64,104],"time-consuming":[20],"experimental":[21],"processes":[22],"for":[23],"proteomics":[24],"research.":[25],"This":[26],"paper":[27,74],"proposes":[28],"combining":[29],"homology-based":[30],"profile":[31],"alignment":[32],"functional-domain":[35],"based":[36,84,107],"Gene":[37],"Ontology":[38],"(GO)":[39],"predict":[42],"locations":[45],"proteins.":[47],"feature":[49],"vectors":[50,83],"constructed":[51],"by":[52,58],"these":[53,115],"two":[54,116],"recognized":[57],"support":[59],"vector":[60],"machine":[61],"(SVM)":[62],"classifiers,":[63],"scores":[66],"fused":[68],"enhance":[70],"classification":[71],"performance.":[72],"also":[75],"investigates":[76],"different":[77],"approaches":[78],"constructing":[80],"GO":[82,87,97],"on":[85,108],"terms":[88],"returned":[89],"from":[90],"InterProScan.":[91],"results":[93],"demonstrate":[94],"that":[95],"comparable":[100],"profile-alignment":[102],"overshadow":[105],"those":[106],"amino-acid":[109],"compositions.":[110],"Also,":[111],"fusion":[113],"can":[118],"outperform":[119],"individual":[121],"methods.":[122]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
