{"id":"https://openalex.org/W4256053389","doi":"https://doi.org/10.1109/mipro.2015.7160259","title":"Cloudflow - A framework for MapReduce pipeline development in Biomedical Research","display_name":"Cloudflow - A framework for MapReduce pipeline development in Biomedical Research","publication_year":2015,"publication_date":"2015-05-01","ids":{"openalex":"https://openalex.org/W4256053389","doi":"https://doi.org/10.1109/mipro.2015.7160259"},"language":"en","primary_location":{"id":"doi:10.1109/mipro.2015.7160259","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mipro.2015.7160259","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 38th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029740420","display_name":"Lukas Forer","orcid":"https://orcid.org/0000-0003-2139-7329"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Lukas Forer","raw_affiliation_strings":["Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","Institute of Computer Science, Research Group Databases and Information Systems, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]},{"raw_affiliation_string":"Institute of Computer Science, Research Group Databases and Information Systems, Innsbruck, Austria","institution_ids":["https://openalex.org/I190249584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006951727","display_name":"Enis Afgan","orcid":"https://orcid.org/0000-0003-0922-6711"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Enis Afgan","raw_affiliation_strings":["Center for Informatics and Computing, Ruder Bo\u0111\u0161kovi\u0107 Institute, Zagreb, Croatia","Department of Biology, Johns Hopkins University, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informatics and Computing, Ruder Bo\u0111\u0161kovi\u0107 Institute, Zagreb, Croatia","institution_ids":[]},{"raw_affiliation_string":"Department of Biology, Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055515363","display_name":"Hansi Wei\u00dfensteiner","orcid":"https://orcid.org/0000-0002-2871-8669"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Hansi Weissensteiner","raw_affiliation_strings":["Division of Genetic Epidemiology, Medical University of Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genetic Epidemiology, Medical University of Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082491978","display_name":"Davor Davidovi\u0107","orcid":"https://orcid.org/0000-0003-2649-9236"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Davor Davidovic","raw_affiliation_strings":["Center for Informatics and Computing, Ruder Bo\u0111\u0161kovi\u0107 Institute, Zagreb, Croatia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informatics and Computing, Ruder Bo\u0111\u0161kovi\u0107 Institute, Zagreb, Croatia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073412960","display_name":"G\u00fcnther Specht","orcid":"https://orcid.org/0000-0003-0978-7201"},"institutions":[{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gunther Specht","raw_affiliation_strings":["Institute of Computer Science, Research Group Databases and Information Systems, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Research Group Databases and Information Systems, Innsbruck, Austria","institution_ids":["https://openalex.org/I190249584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082464365","display_name":"Florian Kronenberg","orcid":"https://orcid.org/0000-0003-2229-1120"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Florian Kronenberg","raw_affiliation_strings":["Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109584850","display_name":"Sebastian Sch\u00f6nherr","orcid":null},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Sebastian Schonherr","raw_affiliation_strings":["Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","Institute of Computer Science, Research Group Databases and Information Systems, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]},{"raw_affiliation_string":"Institute of Computer Science, Research Group Databases and Information Systems, Innsbruck, Austria","institution_ids":["https://openalex.org/I190249584"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.6265,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.93505751,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"45","issue":null,"first_page":"172","last_page":"177"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9496999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8781406879425049},{"id":"https://openalex.org/keywords/orchestration","display_name":"Orchestration","score":0.8298134803771973},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8121523857116699},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7849216461181641},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7349797487258911},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7116080522537231},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6170057058334351},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5459179282188416},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.5211824774742126},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44288355112075806},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.43476828932762146},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3437482416629791},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3145623207092285},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11482429504394531}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8781406879425049},{"id":"https://openalex.org/C199168358","wikidata":"https://www.wikidata.org/wiki/Q3367000","display_name":"Orchestration","level":3,"score":0.8298134803771973},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8121523857116699},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7849216461181641},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7349797487258911},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7116080522537231},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6170057058334351},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5459179282188416},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.5211824774742126},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44288355112075806},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.43476828932762146},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3437482416629791},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3145623207092285},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11482429504394531},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/mipro.2015.7160259","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mipro.2015.7160259","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 38th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5899999737739563,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309652","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291"},{"id":"https://openalex.org/F4320324190","display_name":"Bundesministerium f\u00fcr Wissenschaft und Forschung","ror":"https://ror.org/02d229b24"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1992510233","https://openalex.org/W2003778431","https://openalex.org/W2063652569","https://openalex.org/W2081930221","https://openalex.org/W2092404524","https://openalex.org/W2117798581","https://openalex.org/W2149059931","https://openalex.org/W2160363604","https://openalex.org/W4241298546","https://openalex.org/W4394666350"],"related_works":["https://openalex.org/W2618592742","https://openalex.org/W98143440","https://openalex.org/W4380433113","https://openalex.org/W4386072068","https://openalex.org/W252339960","https://openalex.org/W2390529043","https://openalex.org/W2378320433","https://openalex.org/W2358343511","https://openalex.org/W2071821326","https://openalex.org/W2051877971"],"abstract_inverted_index":{"The":[0,114],"data-driven":[1],"parallelization":[2],"framework":[3,46,89,115],"Hadoop":[4,33,53,95,107],"MapReduce":[5,19],"allows":[6],"analysing":[7],"large":[8],"data":[9],"sets":[10],"in":[11,34,66],"a":[12,23,44,57,67,110],"scalable":[13],"way.":[14,70],"Since":[15],"the":[16,28,49,73,88,94,100],"development":[17],"of":[18,32,52,59,75],"programs":[20],"can":[21,90],"be":[22,85,91],"time-intensive":[24],"and":[25,30,54,99,119],"challenging":[26],"task,":[27],"application":[29],"usage":[31],"Biomedical":[35],"Research":[36],"is":[37,116],"still":[38],"limited.":[39],"Here":[40],"we":[41],"present":[42],"Cloudflow,":[43],"high-level":[45],"to":[47,55,62,105,112],"hide":[48],"implementation":[50],"details":[51],"provide":[56,106],"set":[58],"building":[60],"blocks":[61],"create":[63],"biomedical":[64],"pipelines":[65,108],"more":[68],"intuitive":[69],"We":[71],"demonstrate":[72],"benefit":[74],"Cloudflow":[76],"on":[77],"three":[78],"different":[79],"genetic":[80],"use":[81],"cases.":[82],"It":[83],"will":[84],"shown":[86],"how":[87],"combined":[92],"with":[93],"workflow":[96],"system":[97],"Cloudgene":[98],"cloud":[101],"orchestration":[102],"platform":[103],"CloudMan":[104],"as":[109],"service":[111],"everyone.":[113],"open":[117],"source":[118],"free":[120],"available":[121],"at":[122],"https://github.com/genepi/cloudflow.":[123]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
