{"id":"https://openalex.org/W2003778431","doi":"https://doi.org/10.1109/mipro.2014.6859593","title":"Delivering bioinformatics MapReduce applications in the cloud","display_name":"Delivering bioinformatics MapReduce applications in the cloud","publication_year":2014,"publication_date":"2014-05-01","ids":{"openalex":"https://openalex.org/W2003778431","doi":"https://doi.org/10.1109/mipro.2014.6859593","mag":"2003778431"},"language":"en","primary_location":{"id":"doi:10.1109/mipro.2014.6859593","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mipro.2014.6859593","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 37th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://fulir.irb.hr/1631/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029740420","display_name":"Lukas Forer","orcid":"https://orcid.org/0000-0003-2139-7329"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Lukas Forer","raw_affiliation_strings":["Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","Div. of Genetic Epidemiology, Med. Univ. of Innsbruck, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]},{"raw_affiliation_string":"Div. of Genetic Epidemiology, Med. Univ. of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009325271","display_name":"Tomislav Lipi\u0107","orcid":"https://orcid.org/0000-0002-8037-8198"},"institutions":[{"id":"https://openalex.org/I4210123216","display_name":"Ru\u0111er Bo\u0161kovi\u0107 Institute","ror":"https://ror.org/02mw21745","country_code":"HR","type":"facility","lineage":["https://openalex.org/I4210123216"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Tomislav Lipic","raw_affiliation_strings":["Center for Informatics and Computing, Ruder Bo\u0161kovi\u0107 Institute, Zagreb, Croatia","Center for Inf. & Comput., Ruder Boskovic Inst., Zagreb, Croatia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informatics and Computing, Ruder Bo\u0161kovi\u0107 Institute, Zagreb, Croatia","institution_ids":["https://openalex.org/I4210123216"]},{"raw_affiliation_string":"Center for Inf. & Comput., Ruder Boskovic Inst., Zagreb, Croatia","institution_ids":["https://openalex.org/I4210123216"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109584850","display_name":"Sebastian Sch\u00f6nherr","orcid":null},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Sebastian Schonherr","raw_affiliation_strings":["Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","Div. of Genetic Epidemiology, Med. Univ. of Innsbruck, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]},{"raw_affiliation_string":"Div. of Genetic Epidemiology, Med. Univ. of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111626448","display_name":"Hansi Weisensteiner","orcid":null},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Hansi Weisensteiner","raw_affiliation_strings":["Div. of Genetic Epidemiology, Med. Univ. of Innsbruck, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Div. of Genetic Epidemiology, Med. Univ. of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082491978","display_name":"Davor Davidovi\u0107","orcid":"https://orcid.org/0000-0003-2649-9236"},"institutions":[{"id":"https://openalex.org/I4210123216","display_name":"Ru\u0111er Bo\u0161kovi\u0107 Institute","ror":"https://ror.org/02mw21745","country_code":"HR","type":"facility","lineage":["https://openalex.org/I4210123216"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Davor Davidovic","raw_affiliation_strings":["Center for Informatics and Computing, Ruder Bo\u0161kovi\u0107 Institute, Zagreb, Croatia","Center for Inf. & Comput., Ruder Boskovic Inst., Zagreb, Croatia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informatics and Computing, Ruder Bo\u0161kovi\u0107 Institute, Zagreb, Croatia","institution_ids":["https://openalex.org/I4210123216"]},{"raw_affiliation_string":"Center for Inf. & Comput., Ruder Boskovic Inst., Zagreb, Croatia","institution_ids":["https://openalex.org/I4210123216"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082464365","display_name":"Florian Kronenberg","orcid":"https://orcid.org/0000-0003-2229-1120"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Florian Kronenberg","raw_affiliation_strings":["Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","Div. of Genetic Epidemiology, Med. Univ. of Innsbruck, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Genetic Epidemiology, Medical University of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]},{"raw_affiliation_string":"Div. of Genetic Epidemiology, Med. Univ. of Innsbruck, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708","https://openalex.org/I190249584"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006951727","display_name":"Enis Afgan","orcid":"https://orcid.org/0000-0003-0922-6711"},"institutions":[{"id":"https://openalex.org/I4210123216","display_name":"Ru\u0111er Bo\u0161kovi\u0107 Institute","ror":"https://ror.org/02mw21745","country_code":"HR","type":"facility","lineage":["https://openalex.org/I4210123216"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Enis Afgan","raw_affiliation_strings":["Center for Informatics and Computing, Ruder Bo\u0161kovi\u0107 Institute, Zagreb, Croatia","Center for Inf. & Comput., Ruder Boskovic Inst., Zagreb, Croatia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informatics and Computing, Ruder Bo\u0161kovi\u0107 Institute, Zagreb, Croatia","institution_ids":["https://openalex.org/I4210123216"]},{"raw_affiliation_string":"Center for Inf. & Comput., Ruder Boskovic Inst., Zagreb, Croatia","institution_ids":["https://openalex.org/I4210123216"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":7.7386,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.97117978,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"373","last_page":"377"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9782999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8454318046569824},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8158737421035767},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8003740310668945},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5171229839324951},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5149977207183838},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5050936341285706},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4958702027797699},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.4773402512073517},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4513128101825714},{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.4101911187171936},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3971775770187378},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.346265971660614},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2848205268383026},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19878342747688293}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8454318046569824},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8158737421035767},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8003740310668945},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5171229839324951},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5149977207183838},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5050936341285706},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4958702027797699},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.4773402512073517},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4513128101825714},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.4101911187171936},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3971775770187378},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.346265971660614},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2848205268383026},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19878342747688293},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/mipro.2014.6859593","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mipro.2014.6859593","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 37th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)","raw_type":"proceedings-article"},{"id":"pmh:oai:fulir.irb.hr:1631","is_oa":true,"landing_page_url":"http://fulir.irb.hr/1631/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400095","display_name":"Institutional Repository  of the Ru\u0111er Bo\u0161kovi\u0107 Institute (Ru\u0111er Bo\u0161kovi\u0107 Institute)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123216","host_organization_name":"Ru\u0111er Bo\u0161kovi\u0107 Institute","host_organization_lineage":["https://openalex.org/I4210123216"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:fulir.irb.hr:1631","is_oa":true,"landing_page_url":"http://fulir.irb.hr/1631/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400095","display_name":"Institutional Repository  of the Ru\u0111er Bo\u0161kovi\u0107 Institute (Ru\u0111er Bo\u0161kovi\u0107 Institute)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123216","host_organization_name":"Ru\u0111er Bo\u0161kovi\u0107 Institute","host_organization_lineage":["https://openalex.org/I4210123216"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6499999761581421,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324190","display_name":"Bundesministerium f\u00fcr Wissenschaft und Forschung","ror":"https://ror.org/02d229b24"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1487347167","https://openalex.org/W1488799774","https://openalex.org/W1990073900","https://openalex.org/W1992510233","https://openalex.org/W2011411346","https://openalex.org/W2013434113","https://openalex.org/W2024872854","https://openalex.org/W2063220786","https://openalex.org/W2063652569","https://openalex.org/W2109701112","https://openalex.org/W2117798581","https://openalex.org/W2119180969","https://openalex.org/W2121762798","https://openalex.org/W2136482257","https://openalex.org/W2141978878","https://openalex.org/W2147761046","https://openalex.org/W2149059931","https://openalex.org/W2149414426","https://openalex.org/W2150772374","https://openalex.org/W2154462802","https://openalex.org/W2160363604","https://openalex.org/W6629060523"],"related_works":["https://openalex.org/W4390608645","https://openalex.org/W4247566972","https://openalex.org/W4394895745","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W4206777497","https://openalex.org/W4244478748","https://openalex.org/W2910064364","https://openalex.org/W4200136508"],"abstract_inverted_index":{"The":[0],"ever-increasing":[1],"data":[2,23,31,62,83,142],"production":[3],"and":[4,25,35,48,54,92,117,128,134,158],"availability":[5,131],"in":[6,65,80,176],"the":[7,16,29,36,42,66,81,95,126,130,177],"field":[8],"of":[9,18,45,50,60,111,132,141,148,172],"bioinformatics":[10,71,82,103,120,154,173],"demands":[11],"a":[12,153,160],"paradigm":[13],"shift":[14],"towards":[15],"utilization":[17],"novel":[19],"solutions":[20],"for":[21,57,89,138,163],"efficient":[22],"storage":[24],"processing,":[26],"such":[27],"as":[28,64],"MapReduce":[30,72,104,155,174],"parallel":[32],"programming":[33],"model":[34,47],"corresponding":[37],"Apache":[38],"Hadoop":[39],"framework.":[40],"Despite":[41],"evident":[43],"potential":[44],"this":[46,139],"existence":[49],"already":[51],"available":[52],"algorithms":[53],"applications,":[55],"especially":[56],"batch":[58],"processing":[59],"large":[61],"sets":[63],"Next":[67],"Generation":[68],"Sequencing":[69],"analysis,":[70,127],"applications":[73,175],"are":[74,115],"yet":[75],"to":[76,97,123],"become":[77],"widely":[78],"adopted":[79],"analysis.":[84],"We":[85],"identify":[86],"two":[87,149],"prerequisites":[88],"their":[90],"adaptation":[91],"utilization:":[93],"(1)":[94],"ability":[96],"compose":[98],"complex":[99],"workflows":[100],"from":[101],"multiple":[102],"tools":[105,114],"that":[106],"will":[107],"abstract":[108],"technical":[109],"details":[110],"how":[112],"those":[113],"combined":[116],"executed":[118],"allowing":[119],"domain":[121],"experts":[122],"focus":[124],"on":[125],"(2)":[129],"accessible":[133],"flexible":[135],"computing":[136],"infrastructure":[137],"type":[140],"processing.":[143],"This":[144],"paper":[145],"presents":[146],"integration":[147],"existing":[150],"systems:":[151],"Cloudgene,":[152],"workflow":[156],"framework,":[157],"CloudMan,":[159],"cloud":[161],"manager":[162],"delivering":[164],"application":[165],"execution":[166],"environments.":[167],"Together,":[168],"they":[169],"enable":[170],"delivery":[171],"Cloud.":[178]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
