{"id":"https://openalex.org/W2943500386","doi":"https://doi.org/10.1109/mcse.2019.2907814","title":"SciPipe\u2014Turning Scientific Workflows into Computer Programs","display_name":"SciPipe\u2014Turning Scientific Workflows into Computer Programs","publication_year":2019,"publication_date":"2019-04-30","ids":{"openalex":"https://openalex.org/W2943500386","doi":"https://doi.org/10.1109/mcse.2019.2907814","mag":"2943500386"},"language":"en","primary_location":{"id":"doi:10.1109/mcse.2019.2907814","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mcse.2019.2907814","pdf_url":null,"source":{"id":"https://openalex.org/S107923245","display_name":"Computing in Science & Engineering","issn_l":"1521-9615","issn":["1521-9615","1558-366X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320061","host_organization_name":"AIP Publishing","host_organization_lineage":["https://openalex.org/P4310320061","https://openalex.org/P4310320257"],"host_organization_lineage_names":["AIP Publishing","American Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computing in Science & Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-384084","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076964957","display_name":"Samuel Lampa","orcid":"https://orcid.org/0000-0001-6740-9212"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Samuel Lampa","raw_affiliation_strings":["Uppsala Universitet, Uppsala, SE"],"affiliations":[{"raw_affiliation_string":"Uppsala Universitet, Uppsala, SE","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001646323","display_name":"Martin Dahl\u00f6","orcid":"https://orcid.org/0000-0001-5447-9465"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Martin Dahlo","raw_affiliation_strings":["Uppsala Universitet, Uppsala, SE"],"affiliations":[{"raw_affiliation_string":"Uppsala Universitet, Uppsala, SE","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027509528","display_name":"Jonathan Alvarsson","orcid":"https://orcid.org/0000-0002-8682-7206"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jonathan Alvarsson","raw_affiliation_strings":["Uppsala Universitet, Uppsala, SE"],"affiliations":[{"raw_affiliation_string":"Uppsala Universitet, Uppsala, SE","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046663348","display_name":"Ola Spjuth","orcid":"https://orcid.org/0000-0002-8083-2864"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ola Spjuth","raw_affiliation_strings":["Uppsala Universitet, Uppsala, SE"],"affiliations":[{"raw_affiliation_string":"Uppsala Universitet, Uppsala, SE","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5076964957"],"corresponding_institution_ids":["https://openalex.org/I123387679"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04798426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"21","issue":"3","first_page":"109","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9656000137329102,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8393247723579407},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8322271108627319},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.7807088494300842},{"id":"https://openalex.org/keywords/chaining","display_name":"Chaining","score":0.7241387367248535},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5352407693862915},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.45157426595687866},{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.4497145414352417},{"id":"https://openalex.org/keywords/backward-chaining","display_name":"Backward chaining","score":0.4446662664413452},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4407207667827606},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3798051178455353},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3156059980392456},{"id":"https://openalex.org/keywords/inference-engine","display_name":"Inference engine","score":0.18964049220085144},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.13951849937438965},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10418504476547241}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8393247723579407},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8322271108627319},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.7807088494300842},{"id":"https://openalex.org/C49020025","wikidata":"https://www.wikidata.org/wiki/Q1059099","display_name":"Chaining","level":2,"score":0.7241387367248535},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5352407693862915},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.45157426595687866},{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.4497145414352417},{"id":"https://openalex.org/C129916263","wikidata":"https://www.wikidata.org/wiki/Q1141183","display_name":"Backward chaining","level":4,"score":0.4446662664413452},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4407207667827606},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3798051178455353},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3156059980392456},{"id":"https://openalex.org/C46743427","wikidata":"https://www.wikidata.org/wiki/Q1341685","display_name":"Inference engine","level":3,"score":0.18964049220085144},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.13951849937438965},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10418504476547241},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/mcse.2019.2907814","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mcse.2019.2907814","pdf_url":null,"source":{"id":"https://openalex.org/S107923245","display_name":"Computing in Science & Engineering","issn_l":"1521-9615","issn":["1521-9615","1558-366X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320061","host_organization_name":"AIP Publishing","host_organization_lineage":["https://openalex.org/P4310320061","https://openalex.org/P4310320257"],"host_organization_lineage_names":["AIP Publishing","American Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computing in Science & Engineering","raw_type":"journal-article"},{"id":"pmh:oai:DiVA.org:uu-384084","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-384084","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"}],"best_oa_location":{"id":"pmh:oai:DiVA.org:uu-384084","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-384084","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6200000047683716}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2398156233","https://openalex.org/W2555194672","https://openalex.org/W2605897695","https://openalex.org/W2766666504","https://openalex.org/W2891992558","https://openalex.org/W6712638848"],"related_works":["https://openalex.org/W2132414486","https://openalex.org/W2044830634","https://openalex.org/W2114383597","https://openalex.org/W2472912427","https://openalex.org/W4238340239","https://openalex.org/W2767696758","https://openalex.org/W2184441786","https://openalex.org/W2886511220","https://openalex.org/W3105211564","https://openalex.org/W2129428592"],"abstract_inverted_index":{"Scientific":[0],"workflows":[1,155],"are":[2,72,104,109,150,156],"becoming":[3],"increasingly":[4],"popular":[5],"as":[6,41],"a":[7,49,83,141],"way":[8],"to":[9,59,81,87,99,139,158],"automate":[10],"complex":[11],"scientific":[12,154],"computations":[13],"consisting":[14],"of":[15,19,31,63,129],"multiple":[16,36],"programs.":[17],"One":[18],"the":[20,44,60,112,135],"main":[21],"motivations":[22],"behind":[23],"this":[24],"development":[25],"is":[26,42],"increased":[27],"robustness":[28],"and":[29,55,66,85,107],"reproducibility":[30],"computational":[32],"analyses.":[33],"Chaining":[34],"together":[35],"programs":[37],"using":[38],"plain":[39,70,119],"scripts,":[40],"often":[43],"first":[45],"step":[46],"in":[47],"automating":[48],"pipeline,":[50],"can":[51,96,145],"easily":[52],"become":[53],"fragile":[54],"error":[56],"prone":[57],"due":[58],"manual":[61],"management":[62],"file":[64,144],"paths":[65],"program":[67],"invocations.":[68],"Also,":[69],"scripts":[71,120],"not":[73,117,122],"optimal":[74],"if":[75],"for":[76],"some":[77],"reason":[78],"you":[79],"have":[80],"cancel":[82],"run":[84],"try":[86],"restart":[88],"it":[89],"from":[90,111],"any":[91],"partially":[92],"finished":[93,106],"steps.":[94],"It":[95],"be":[97,146],"hard":[98],"know":[100],"which":[101,108],"output":[102,143],"files":[103],"properly":[105],"truncated":[110],"cancelled":[113],"run.":[114],"Last":[115],"but":[116],"least,":[118],"do":[121],"by":[123],"default":[124],"save":[125],"an":[126],"execution":[127],"trace":[128],"what":[130],"was":[131],"run,":[132],"such":[133],"that":[134,153],"full":[136],"procedure":[137],"used":[138],"create":[140],"specific":[142],"clearly":[147],"presented.":[148],"These":[149],"all":[151],"aspects":[152],"designed":[157],"help":[159],"with.":[160]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}