{"id":"https://openalex.org/W2888786028","doi":"https://doi.org/10.1109/mcse.2018.05329812","title":"Exascale Computing: A New Dawn for Computational Biology","display_name":"Exascale Computing: A New Dawn for Computational Biology","publication_year":2018,"publication_date":"2018-08-30","ids":{"openalex":"https://openalex.org/W2888786028","doi":"https://doi.org/10.1109/mcse.2018.05329812","mag":"2888786028","pmid":"https://pubmed.ncbi.nlm.nih.gov/30983889"},"language":"en","primary_location":{"id":"doi:10.1109/mcse.2018.05329812","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mcse.2018.05329812","pdf_url":null,"source":{"id":"https://openalex.org/S107923245","display_name":"Computing in Science & Engineering","issn_l":"1521-9615","issn":["1521-9615","1558-366X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320061","host_organization_name":"AIP Publishing","host_organization_lineage":["https://openalex.org/P4310320061","https://openalex.org/P4310320257"],"host_organization_lineage_names":["AIP Publishing","American Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computing in Science & Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085406263","display_name":"Christopher T. Lee","orcid":"https://orcid.org/0000-0002-0670-2308"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher T. Lee","raw_affiliation_strings":["University of California, San Diego"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081468273","display_name":"Rommie E. Amaro","orcid":"https://orcid.org/0000-0002-9275-9553"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rommie E. Amaro","raw_affiliation_strings":["University of California, San Diego"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":null,"apc_paid":null,"fwci":1.4847,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.82543035,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"20","issue":"5","first_page":"18","last_page":"25"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.973800003528595,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9714999794960022,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7412610054016113},{"id":"https://openalex.org/keywords/exascale-computing","display_name":"Exascale computing","score":0.5952462553977966},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.5893039703369141},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49709799885749817},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.4538199007511139},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.44745510816574097},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.36000531911849976},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.33995088934898376},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.24154284596443176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1910218596458435},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.17354312539100647},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11173462867736816}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7412610054016113},{"id":"https://openalex.org/C2778837361","wikidata":"https://www.wikidata.org/wiki/Q2450880","display_name":"Exascale computing","level":3,"score":0.5952462553977966},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.5893039703369141},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49709799885749817},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.4538199007511139},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.44745510816574097},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.36000531911849976},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.33995088934898376},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.24154284596443176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1910218596458435},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.17354312539100647},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11173462867736816}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/mcse.2018.05329812","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mcse.2018.05329812","pdf_url":null,"source":{"id":"https://openalex.org/S107923245","display_name":"Computing in Science & Engineering","issn_l":"1521-9615","issn":["1521-9615","1558-366X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320061","host_organization_name":"AIP Publishing","host_organization_lineage":["https://openalex.org/P4310320061","https://openalex.org/P4310320257"],"host_organization_lineage_names":["AIP Publishing","American Institute of Physics"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computing in Science & Engineering","raw_type":"journal-article"},{"id":"pmid:30983889","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30983889","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computing in science & engineering","raw_type":null},{"id":"pmh:oai:europepmc.org:5678281","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6458592","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G145338696","display_name":null,"funder_award_id":"P41 GM103426","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G343286159","display_name":null,"funder_award_id":"T32-GM008326","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1072488465","https://openalex.org/W1590922160","https://openalex.org/W1881109669","https://openalex.org/W1974035453","https://openalex.org/W1977046764","https://openalex.org/W2019555480","https://openalex.org/W2038665424","https://openalex.org/W2056967673","https://openalex.org/W2109476464","https://openalex.org/W2118571345","https://openalex.org/W2119404103","https://openalex.org/W2130479394","https://openalex.org/W2142171814","https://openalex.org/W2271736303","https://openalex.org/W2336332546","https://openalex.org/W2419259862","https://openalex.org/W2519539312","https://openalex.org/W2588867992","https://openalex.org/W2590241482","https://openalex.org/W2612812586","https://openalex.org/W2741219166","https://openalex.org/W2768702618","https://openalex.org/W2798017727"],"related_works":["https://openalex.org/W4318068934","https://openalex.org/W2290952066","https://openalex.org/W2056528600","https://openalex.org/W3128098196","https://openalex.org/W4320480730","https://openalex.org/W4297752063","https://openalex.org/W4386563820","https://openalex.org/W631732704","https://openalex.org/W2315680351","https://openalex.org/W207829213"],"abstract_inverted_index":{"As":[0],"biologists":[1],"discover":[2],"and":[3,15,43,50],"learn":[4],"to":[5,47],"embrace":[6],"the":[7,28,39],"complexity":[8],"of":[9,30,41],"biological":[10],"systems,":[11],"computational":[12],"data":[13],"analysis":[14],"modeling":[16],"have":[17],"become":[18],"critical":[19],"for":[20],"furthering":[21],"our":[22],"understanding.":[23],"Exascale":[24],"computing":[25],"will":[26],"enable":[27],"development":[29],"new":[31,48],"predictive":[32],"multiscale":[33],"models,":[34],"transforming":[35],"how":[36],"we":[37],"study":[38],"behaviors":[40],"organisms":[42],"ecosystems,":[44],"ultimately":[45],"leading":[46],"innovations":[49],"discoveries.":[51]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}