{"id":"https://openalex.org/W1981336429","doi":"https://doi.org/10.1109/mc.2012.71","title":"Algorithms and Genome Sequencing: Identifying Driver Pathways in Cancer","display_name":"Algorithms and Genome Sequencing: Identifying Driver Pathways in Cancer","publication_year":2012,"publication_date":"2012-02-22","ids":{"openalex":"https://openalex.org/W1981336429","doi":"https://doi.org/10.1109/mc.2012.71","mag":"1981336429"},"language":"en","primary_location":{"id":"doi:10.1109/mc.2012.71","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mc.2012.71","pdf_url":null,"source":{"id":"https://openalex.org/S178916657","display_name":"Computer","issn_l":"0018-9162","issn":["0018-9162","1558-0814"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060279781","display_name":"Fabio Vandin","orcid":"https://orcid.org/0000-0003-2244-2320"},"institutions":[{"id":"https://openalex.org/I175594653","display_name":"John Brown University","ror":"https://ror.org/02ct41q97","country_code":"US","type":"education","lineage":["https://openalex.org/I175594653"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fabio Vandin","raw_affiliation_strings":["Department of Computer Science, Brown University, USA","Brown University"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brown University, USA","institution_ids":["https://openalex.org/I175594653"]},{"raw_affiliation_string":"Brown University","institution_ids":["https://openalex.org/I175594653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028869858","display_name":"Eli Upfal","orcid":"https://orcid.org/0000-0002-9321-9460"},"institutions":[{"id":"https://openalex.org/I175594653","display_name":"John Brown University","ror":"https://ror.org/02ct41q97","country_code":"US","type":"education","lineage":["https://openalex.org/I175594653"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eli Upfal","raw_affiliation_strings":["Department of Computer Science, Brown University, USA","Brown University"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brown University, USA","institution_ids":["https://openalex.org/I175594653"]},{"raw_affiliation_string":"Brown University","institution_ids":["https://openalex.org/I175594653"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025899028","display_name":"Benjamin J. Raphael","orcid":"https://orcid.org/0000-0003-1274-048X"},"institutions":[{"id":"https://openalex.org/I175594653","display_name":"John Brown University","ror":"https://ror.org/02ct41q97","country_code":"US","type":"education","lineage":["https://openalex.org/I175594653"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Raphael","raw_affiliation_strings":["Department of Computer Science, Brown University, USA","Brown University"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brown University, USA","institution_ids":["https://openalex.org/I175594653"]},{"raw_affiliation_string":"Brown University","institution_ids":["https://openalex.org/I175594653"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060279781"],"corresponding_institution_ids":["https://openalex.org/I175594653"],"apc_list":null,"apc_paid":null,"fwci":0.394,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.60058626,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"45","issue":"3","first_page":"39","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6887784004211426},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5939216613769531},{"id":"https://openalex.org/keywords/cancer-genome-sequencing","display_name":"Cancer genome sequencing","score":0.48808395862579346},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4508570730686188},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4262453317642212},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.41751986742019653},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29983383417129517},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24150773882865906},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19892704486846924}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6887784004211426},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5939216613769531},{"id":"https://openalex.org/C205270622","wikidata":"https://www.wikidata.org/wiki/Q17082639","display_name":"Cancer genome sequencing","level":5,"score":0.48808395862579346},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4508570730686188},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4262453317642212},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.41751986742019653},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29983383417129517},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24150773882865906},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19892704486846924}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/mc.2012.71","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mc.2012.71","pdf_url":null,"source":{"id":"https://openalex.org/S178916657","display_name":"Computer","issn_l":"0018-9162","issn":["0018-9162","1558-0814"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer","raw_type":"journal-article"},{"id":"pmh:oai:www.research.unipd.it:11577/3231515","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3231515","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1965856472","https://openalex.org/W2005129098","https://openalex.org/W2028544122","https://openalex.org/W2034510362","https://openalex.org/W2062312459","https://openalex.org/W2095319945","https://openalex.org/W2100025044","https://openalex.org/W2110065044","https://openalex.org/W2121443461","https://openalex.org/W2123696077"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W193851735","https://openalex.org/W3178279768","https://openalex.org/W2053972265","https://openalex.org/W1825953629","https://openalex.org/W4226072504","https://openalex.org/W2146843224"],"abstract_inverted_index":{"Two":[0],"proposed":[1],"algorithms":[2],"predict":[3],"which":[4],"combinations":[5],"of":[6,27,35],"mutations":[7,36],"in":[8],"cancer":[9],"genomes":[10],"are":[11],"priorities":[12],"for":[13,33],"experimental":[14],"study.":[15],"One":[16],"relies":[17],"on":[18],"interaction":[19],"network":[20],"data":[21],"to":[22],"identify":[23],"recurrently":[24],"mutated":[25],"sets":[26],"genes,":[28],"while":[29],"the":[30],"other":[31],"searches":[32],"groups":[34],"that":[37],"exhibit":[38],"specific":[39],"combinatorial":[40],"properties.":[41]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
