{"id":"https://openalex.org/W4310793419","doi":"https://doi.org/10.1109/ldav57265.2022.9966406","title":"High-Quality Progressive Alignment of Large 3D Microscopy Data","display_name":"High-Quality Progressive Alignment of Large 3D Microscopy Data","publication_year":2022,"publication_date":"2022-10-16","ids":{"openalex":"https://openalex.org/W4310793419","doi":"https://doi.org/10.1109/ldav57265.2022.9966406"},"language":"en","primary_location":{"id":"doi:10.1109/ldav57265.2022.9966406","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ldav57265.2022.9966406","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE 12th Symposium on Large Data Analysis and Visualization (LDAV)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034071502","display_name":"Aniketh Venkat","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aniketh Venkat","raw_affiliation_strings":["SCI Institute, University of Utah"],"affiliations":[{"raw_affiliation_string":"SCI Institute, University of Utah","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087199227","display_name":"Duong Thi Anh Hoang","orcid":"https://orcid.org/0000-0003-4707-7198"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duong Hoang","raw_affiliation_strings":["SCI Institute, University of Utah"],"affiliations":[{"raw_affiliation_string":"SCI Institute, University of Utah","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047677160","display_name":"Attila Gyulassy","orcid":"https://orcid.org/0000-0002-6046-8022"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Attila Gyulassy","raw_affiliation_strings":["SCI Institute, University of Utah"],"affiliations":[{"raw_affiliation_string":"SCI Institute, University of Utah","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019902487","display_name":"Peer\u2010Timo Bremer","orcid":"https://orcid.org/0000-0003-4107-3831"},"institutions":[{"id":"https://openalex.org/I1282311441","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282311441","https://openalex.org/I1330989302","https://openalex.org/I198811213","https://openalex.org/I4210138311"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peer-Timo Bremer","raw_affiliation_strings":["Lawrence Livermore National Labs"],"affiliations":[{"raw_affiliation_string":"Lawrence Livermore National Labs","institution_ids":["https://openalex.org/I1282311441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059119847","display_name":"Frederick Federer","orcid":"https://orcid.org/0000-0002-1340-865X"},"institutions":[{"id":"https://openalex.org/I4210151938","display_name":"Eye Institute of Utah","ror":"https://ror.org/04kcn9y49","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frederick Federer","raw_affiliation_strings":["Moran Eye Institute, University of Utah"],"affiliations":[{"raw_affiliation_string":"Moran Eye Institute, University of Utah","institution_ids":["https://openalex.org/I4210151938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072475394","display_name":"Alessandra Angelucci","orcid":"https://orcid.org/0000-0002-1957-2231"},"institutions":[{"id":"https://openalex.org/I4210151938","display_name":"Eye Institute of Utah","ror":"https://ror.org/04kcn9y49","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210151938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alessandra Angelucci","raw_affiliation_strings":["Moran Eye Institute, University of Utah"],"affiliations":[{"raw_affiliation_string":"Moran Eye Institute, University of Utah","institution_ids":["https://openalex.org/I4210151938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009460413","display_name":"Valerio Pascucci","orcid":"https://orcid.org/0000-0002-8877-2042"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Valerio Pascucci","raw_affiliation_strings":["SCI Institute, University of Utah"],"affiliations":[{"raw_affiliation_string":"SCI Institute, University of Utah","institution_ids":["https://openalex.org/I223532165"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5034071502"],"corresponding_institution_ids":["https://openalex.org/I223532165"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11297056,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10191","display_name":"Robotics and Sensor-Based Localization","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7612317800521851},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.6954069137573242},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6479361057281494},{"id":"https://openalex.org/keywords/terabyte","display_name":"Terabyte","score":0.6044821739196777},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.49225202202796936},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4303857982158661},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4301969110965729},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.4270774722099304},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4155125021934509},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3441667854785919}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7612317800521851},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.6954069137573242},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6479361057281494},{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.6044821739196777},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.49225202202796936},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4303857982158661},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4301969110965729},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.4270774722099304},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4155125021934509},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3441667854785919},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ldav57265.2022.9966406","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ldav57265.2022.9966406","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE 12th Symposium on Large Data Analysis and Visualization (LDAV)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1673310716","https://openalex.org/W1677409904","https://openalex.org/W1832233747","https://openalex.org/W1966540157","https://openalex.org/W1977691361","https://openalex.org/W1982753412","https://openalex.org/W2022235653","https://openalex.org/W2029679244","https://openalex.org/W2036984232","https://openalex.org/W2054484909","https://openalex.org/W2101195175","https://openalex.org/W2102182691","https://openalex.org/W2103174519","https://openalex.org/W2106237508","https://openalex.org/W2121894025","https://openalex.org/W2128366179","https://openalex.org/W2131938193","https://openalex.org/W2136162648","https://openalex.org/W2137285991","https://openalex.org/W2137796516","https://openalex.org/W2138607476","https://openalex.org/W2143425433","https://openalex.org/W2144594079","https://openalex.org/W2147555557","https://openalex.org/W2150137371","https://openalex.org/W2151103935","https://openalex.org/W2158453800","https://openalex.org/W2162280291","https://openalex.org/W2163009106","https://openalex.org/W2169042200","https://openalex.org/W2171447090","https://openalex.org/W2171490473","https://openalex.org/W2948296917","https://openalex.org/W2963917313","https://openalex.org/W2966422204","https://openalex.org/W6637131181"],"related_works":["https://openalex.org/W2066858118","https://openalex.org/W3011699130","https://openalex.org/W2134017072","https://openalex.org/W1976914335","https://openalex.org/W2915208987","https://openalex.org/W2152256925","https://openalex.org/W1940452713","https://openalex.org/W2005567565","https://openalex.org/W2058150833","https://openalex.org/W2806040249"],"abstract_inverted_index":{"Large-scale":[0],"three-dimensional":[1],"(3D)":[2],"microscopy":[3],"acquisitions":[4],"fre-quently":[5],"create":[6],"terabytes":[7],"of":[8,165,213,237,244],"image":[9,26],"data":[10],"at":[11,19,62,140,171,203,215],"high":[12,20,95],"resolution":[13,64,142,173,192,217],"and":[14,41,61,68,83,115,197,250],"magni-fication.":[15],"Imaging":[16],"large":[17],"specimens":[18],"magnifications":[21],"requires":[22,240],"acquiring":[23],"3D":[24,46,57],"overlapping":[25,55,178,226],"stacks":[27],"as":[28],"tiles":[29,58],"arranged":[30],"on":[31,80],"a":[32,44,151,159,162,185,209,252],"two-dimensional":[33],"(2D)":[34],"grid":[35],"that":[36,167,189],"must":[37],"subsequently":[38],"be":[39],"aligned":[40],"fused":[42],"into":[43,111],"single":[45,160],"volume.":[47],"Due":[48],"to":[49,88,101,106,130,148,157,194,218,264],"their":[50],"sheer":[51],"size,":[52],"aligning":[53,136,207],"many":[54],"gigabyte-sized":[56],"in":[59,120],"parallel":[60,248],"full":[63,141,172,216],"is":[65,105,156,231],"memory":[66,103],"intensive":[67],"often":[69],"I/O":[70],"bound.":[71],"Current":[72],"techniques":[73],"trade":[74],"accuracy":[75],"for":[76,259,266],"scalability,":[77],"perform":[78],"alignment":[79,91,129,170,255,267],"subsampled":[81],"images,":[82],"require":[84],"additional":[85,260],"postprocess":[86],"algorithms":[87],"refine":[89,196],"the":[90,102,108,117,123,126,132,177,200,220,235,238,257],"quality,":[92],"usually":[93],"with":[94,125],"computational":[96],"requirements.":[97],"One":[98],"common":[99],"solution":[100,155],"problem":[104],"subdivide":[107],"overlap":[109],"region":[110],"smaller":[112],"chunks":[113],"(sub-blocks)":[114],"align":[116,198],"sub-block":[118,138],"pairs":[119,139],"parallel,":[121],"choosing":[122],"pair":[124],"most":[127],"reliable":[128],"determine":[131,219],"global":[133],"transformation.":[134],"Yet":[135],"all":[137,176],"remains":[143],"computationally":[144],"expensive.":[145],"The":[146],"key":[147],"quickly":[149],"developing":[150],"fast,":[152],"high-quality,":[153],"low-memory":[154],"identify":[158],"or":[161],"small":[163,210],"set":[164],"sub-blocks":[166,214],"give":[168],"good":[169],"without":[174,256],"touching":[175],"data.":[179],"In":[180],"this":[181],"paper,":[182],"we":[183],"present":[184],"new":[186],"iterative":[187],"approach":[188,230],"leverages":[190],"coarse":[191],"alignments":[193],"progressively":[195],"only":[199,208],"promising":[201],"candidates":[202],"finer":[204],"resolutions,":[205],"thereby":[206],"user-defined":[211],"number":[212],"lowest":[221],"error":[222],"transformation":[223],"between":[224],"pairwise":[225],"tiles.":[227],"Our":[228],"progressive":[229],"2.6x":[232],"faster":[233],"than":[234,242],"state":[236],"art,":[239],"less":[241],"450MB":[243],"peak":[245],"RAM":[246],"(per":[247],"thread),":[249],"offers":[251],"higher":[253],"quality":[254],"need":[258],"postprocessing":[261],"refinement":[262],"steps":[263],"correct":[265],"errors.":[268]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
