{"id":"https://openalex.org/W4200417384","doi":"https://doi.org/10.1109/kse53942.2021.9648755","title":"A comprehensive and bias-free evaluation of genomic variant clinical interpretation tools","display_name":"A comprehensive and bias-free evaluation of genomic variant clinical interpretation tools","publication_year":2021,"publication_date":"2021-11-10","ids":{"openalex":"https://openalex.org/W4200417384","doi":"https://doi.org/10.1109/kse53942.2021.9648755"},"language":"en","primary_location":{"id":"doi:10.1109/kse53942.2021.9648755","is_oa":false,"landing_page_url":"https://doi.org/10.1109/kse53942.2021.9648755","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Knowledge and Systems Engineering (KSE)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101962152","display_name":"Nguyen Minh Trang","orcid":"https://orcid.org/0000-0002-0438-8538"},"institutions":[{"id":"https://openalex.org/I4210148301","display_name":"Institute of Mathematics","ror":"https://ror.org/04jr71r83","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210148301","https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Nguyen Minh Trang","raw_affiliation_strings":["Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam"],"raw_orcid":"https://orcid.org/0000-0002-0438-8538","affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","institution_ids":["https://openalex.org/I4210148301"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019525502","display_name":"Anh-Vu Mai-Nguyen","orcid":"https://orcid.org/0000-0003-1270-2512"},"institutions":[{"id":"https://openalex.org/I4210148301","display_name":"Institute of Mathematics","ror":"https://ror.org/04jr71r83","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210148301","https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Mai Nguyen Anh Vu","raw_affiliation_strings":["Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam"],"raw_orcid":"https://orcid.org/0000-0003-1270-2512","affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","institution_ids":["https://openalex.org/I4210148301"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055348023","display_name":"Tran Hoang Anh","orcid":"https://orcid.org/0000-0003-4814-7370"},"institutions":[{"id":"https://openalex.org/I4210148301","display_name":"Institute of Mathematics","ror":"https://ror.org/04jr71r83","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210148301","https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Tran Hoang Anh","raw_affiliation_strings":["Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam"],"raw_orcid":"https://orcid.org/0000-0003-4814-7370","affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","institution_ids":["https://openalex.org/I4210148301"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071093975","display_name":"Nguyet Do","orcid":"https://orcid.org/0000-0002-7061-074X"},"institutions":[{"id":"https://openalex.org/I4210148301","display_name":"Institute of Mathematics","ror":"https://ror.org/04jr71r83","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210148301","https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Do Nguyet Minh","raw_affiliation_strings":["Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam"],"raw_orcid":"https://orcid.org/0000-0002-7061-074X","affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","institution_ids":["https://openalex.org/I4210148301"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077672309","display_name":"Nguyen Thanh Nguyen","orcid":"https://orcid.org/0000-0001-9578-3420"},"institutions":[{"id":"https://openalex.org/I4210148301","display_name":"Institute of Mathematics","ror":"https://ror.org/04jr71r83","country_code":"VN","type":"facility","lineage":["https://openalex.org/I4210148301","https://openalex.org/I70349855"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Nguyen Thanh Nguyen","raw_affiliation_strings":["Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam"],"raw_orcid":"https://orcid.org/0000-0001-9578-3420","affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute,Hanoi,Vietnam","institution_ids":["https://openalex.org/I4210148301"]},{"raw_affiliation_string":"Center for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210148301"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.2828125,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7586543560028076},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.6536335945129395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6462452411651611},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5541653633117676},{"id":"https://openalex.org/keywords/confusion","display_name":"Confusion","score":0.5432674884796143},{"id":"https://openalex.org/keywords/genomic-sequencing","display_name":"Genomic sequencing","score":0.5363795757293701},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46079784631729126},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.41826245188713074},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38495054841041565},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32487785816192627},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19891712069511414},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17408546805381775},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.15917015075683594},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.08165833353996277},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08155038952827454}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7586543560028076},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.6536335945129395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6462452411651611},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5541653633117676},{"id":"https://openalex.org/C2781140086","wikidata":"https://www.wikidata.org/wiki/Q557945","display_name":"Confusion","level":2,"score":0.5432674884796143},{"id":"https://openalex.org/C2994067223","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"Genomic sequencing","level":4,"score":0.5363795757293701},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46079784631729126},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.41826245188713074},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38495054841041565},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32487785816192627},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19891712069511414},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17408546805381775},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.15917015075683594},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.08165833353996277},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08155038952827454},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C11171543","wikidata":"https://www.wikidata.org/wiki/Q41630","display_name":"Psychoanalysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/kse53942.2021.9648755","is_oa":false,"landing_page_url":"https://doi.org/10.1109/kse53942.2021.9648755","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 13th International Conference on Knowledge and Systems Engineering (KSE)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1219967271","https://openalex.org/W1829137581","https://openalex.org/W1970413157","https://openalex.org/W1980123897","https://openalex.org/W1984195830","https://openalex.org/W1985849948","https://openalex.org/W2038473742","https://openalex.org/W2109372707","https://openalex.org/W2117856964","https://openalex.org/W2124790653","https://openalex.org/W2132522861","https://openalex.org/W2143238378","https://openalex.org/W2145191876","https://openalex.org/W2146703483","https://openalex.org/W2148105023","https://openalex.org/W2154866190","https://openalex.org/W2156521045","https://openalex.org/W2161978970","https://openalex.org/W2163739552","https://openalex.org/W2168440186","https://openalex.org/W2195303995","https://openalex.org/W2535426958","https://openalex.org/W2607941059","https://openalex.org/W2751686252","https://openalex.org/W2799974675","https://openalex.org/W2883972171","https://openalex.org/W2905452503","https://openalex.org/W2909194804","https://openalex.org/W2944959599","https://openalex.org/W2967605415","https://openalex.org/W3013149459","https://openalex.org/W3022298391","https://openalex.org/W3128153948","https://openalex.org/W3129351841","https://openalex.org/W3210428390","https://openalex.org/W4230965853","https://openalex.org/W4236110830","https://openalex.org/W4237288619","https://openalex.org/W4302768905","https://openalex.org/W4402843978"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2135966063","https://openalex.org/W3107869621","https://openalex.org/W3015706480","https://openalex.org/W2414712109","https://openalex.org/W2097906027","https://openalex.org/W2120048439","https://openalex.org/W3093620165"],"abstract_inverted_index":{"The":[0],"advancement":[1],"of":[2,11,22,40,50,73,81,102,108],"Next":[3],"Generation":[4],"Sequencing":[5],"(NGS)":[6],"generates":[7],"a":[8,60,96],"huge":[9],"pool":[10],"raw":[12],"sequencing":[13],"data":[14],"and":[15,113],"genomic":[16,41],"variants,":[17],"while":[18],"the":[19,31,34,48,87,100,106],"diverse":[20],"selection":[21],"variant":[23,68],"annotation":[24,69],"tools":[25,36,70],"adds":[26],"even":[27],"more":[28],"confusion":[29],"to":[30,47,64,86],"mix.":[32],"Choosing":[33],"right":[35],"for":[37,118],"clinical":[38,74,109],"interpretation":[39],"variants":[42],"is":[43,94],"still":[44,95],"challenging":[45],"due":[46],"lack":[49],"comprehensive":[51],"evaluation":[52,114],"studies":[53],"in":[54,71,105],"this":[55],"field.":[56],"Here,":[57],"we":[58],"introduced":[59],"bias-free":[61],"analysis":[62,112],"approach":[63],"assess":[65],"ten":[66],"well-known":[67],"terms":[72],"interpretation.":[75,110],"Our":[76,111],"results":[77],"revealed":[78],"notable":[79],"correlations":[80],"contemporary":[82],"methods":[83],"when":[84],"applied":[85],"Clin":[88],"Var":[89],"dataset.":[90],"Moreover,":[91],"allele":[92],"frequency":[93],"strong":[97],"predictor,":[98],"emphasizing":[99],"importance":[101],"biological":[103],"insight":[104],"prediction":[107],"scripts":[115],"are":[116],"available":[117],"public":[119],"use":[120],"at":[121],"https://github.com/nmtrang001Var_Annot_Eval.":[122]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
