{"id":"https://openalex.org/W2769501512","doi":"https://doi.org/10.1109/kse.2017.8119449","title":"Genomedics: Whole exome analysis system for clinical studies","display_name":"Genomedics: Whole exome analysis system for clinical studies","publication_year":2017,"publication_date":"2017-10-01","ids":{"openalex":"https://openalex.org/W2769501512","doi":"https://doi.org/10.1109/kse.2017.8119449","mag":"2769501512"},"language":"en","primary_location":{"id":"doi:10.1109/kse.2017.8119449","is_oa":false,"landing_page_url":"http://doi.org/10.1109/kse.2017.8119449","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 9th International Conference on Knowledge and Systems Engineering (KSE)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075478912","display_name":"L\u00ea S\u1ef9 Vinh","orcid":"https://orcid.org/0000-0002-9060-9199"},"institutions":[{"id":"https://openalex.org/I177233841","display_name":"Vietnam National University, Hanoi","ror":"https://ror.org/02jmfj006","country_code":"VN","type":"education","lineage":["https://openalex.org/I177233841"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Le Sy Vinh","raw_affiliation_strings":["University of Engineering and Technology, Vietnam National University, Hanoi,Hanoi,Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Engineering and Technology, Vietnam National University, Hanoi,Hanoi,Vietnam","institution_ids":["https://openalex.org/I177233841"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058500860","display_name":"Nguyen Duc Canh","orcid":null},"institutions":[{"id":"https://openalex.org/I177233841","display_name":"Vietnam National University, Hanoi","ror":"https://ror.org/02jmfj006","country_code":"VN","type":"education","lineage":["https://openalex.org/I177233841"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Nguyen Duc Canh","raw_affiliation_strings":["University of Engineering and Technology, Vietnam National University, Hanoi,Hanoi,Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Engineering and Technology, Vietnam National University, Hanoi,Hanoi,Vietnam","institution_ids":["https://openalex.org/I177233841"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008139322","display_name":"Bui Ngoc Thang","orcid":null},"institutions":[{"id":"https://openalex.org/I177233841","display_name":"Vietnam National University, Hanoi","ror":"https://ror.org/02jmfj006","country_code":"VN","type":"education","lineage":["https://openalex.org/I177233841"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Bui Ngoc Thang","raw_affiliation_strings":["University of Engineering and Technology, Vietnam National University, Hanoi,Hanoi,Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Engineering and Technology, Vietnam National University, Hanoi,Hanoi,Vietnam","institution_ids":["https://openalex.org/I177233841"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Do Thi Thu Hang","orcid":null},"institutions":[{"id":"https://openalex.org/I123565023","display_name":"Vietnam National University Ho Chi Minh City","ror":"https://ror.org/00waaqh38","country_code":"VN","type":"education","lineage":["https://openalex.org/I123565023"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Do Thi Thu Hang","raw_affiliation_strings":["School of Medicine Vietnam National University HCMC Ho Chi Minh City Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine Vietnam National University HCMC Ho Chi Minh City Vietnam","institution_ids":["https://openalex.org/I123565023"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075530864","display_name":"Duong Quoc Chinh","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Duong Quoc Chinh","raw_affiliation_strings":["National Institute of Hematology and Blood Transfusion, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Hematology and Blood Transfusion, Hanoi, Vietnam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058557408","display_name":"Tran Cong Hoang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tran Cong Hoang","raw_affiliation_strings":["National Institute of Hematology and Blood Transfusion, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Hematology and Blood Transfusion, Hanoi, Vietnam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038333320","display_name":"Le Ba Hong Minh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109845","display_name":"Vinmec International Hospital","ror":"https://ror.org/01q2pxs68","country_code":"VN","type":"healthcare","lineage":["https://openalex.org/I4210109845"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Le Ba Hong Minh","raw_affiliation_strings":["Vinmec Research Institute of Stem Cell and Gene Technology, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vinmec Research Institute of Stem Cell and Gene Technology, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210109845"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021547016","display_name":"Pham Thi Dieu Linh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109845","display_name":"Vinmec International Hospital","ror":"https://ror.org/01q2pxs68","country_code":"VN","type":"healthcare","lineage":["https://openalex.org/I4210109845"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Pham Thi Dieu Linh","raw_affiliation_strings":["Vinmec Research Institute of Stem Cell and Gene Technology, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vinmec Research Institute of Stem Cell and Gene Technology, Hanoi, Vietnam","institution_ids":["https://openalex.org/I4210109845"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14580983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"133","issue":null,"first_page":"142","last_page":"147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.6865902543067932},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6601477861404419},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.5468459129333496},{"id":"https://openalex.org/keywords/homogeneous","display_name":"Homogeneous","score":0.48857101798057556},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.442844033241272},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39935609698295593},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3394477367401123},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15106254816055298},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1218734085559845},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.1173979640007019},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10225513577461243},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07742345333099365},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07614430785179138}],"concepts":[{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.6865902543067932},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6601477861404419},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.5468459129333496},{"id":"https://openalex.org/C66882249","wikidata":"https://www.wikidata.org/wiki/Q169336","display_name":"Homogeneous","level":2,"score":0.48857101798057556},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.442844033241272},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39935609698295593},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3394477367401123},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15106254816055298},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1218734085559845},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.1173979640007019},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10225513577461243},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07742345333099365},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07614430785179138},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/kse.2017.8119449","is_oa":false,"landing_page_url":"http://doi.org/10.1109/kse.2017.8119449","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 9th International Conference on Knowledge and Systems Engineering (KSE)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W103409235","https://openalex.org/W1596062789","https://openalex.org/W1905244645","https://openalex.org/W1952904649","https://openalex.org/W2041041650","https://openalex.org/W2045791858","https://openalex.org/W2060965924","https://openalex.org/W2078512370","https://openalex.org/W2079108527","https://openalex.org/W2103441770","https://openalex.org/W2106578986","https://openalex.org/W2108234281","https://openalex.org/W2119180969","https://openalex.org/W2119818111","https://openalex.org/W2133339454","https://openalex.org/W2138170649","https://openalex.org/W2143238378","https://openalex.org/W2153065499","https://openalex.org/W2159933632","https://openalex.org/W2168133698","https://openalex.org/W2169846247","https://openalex.org/W2170551349","https://openalex.org/W2173033037","https://openalex.org/W2179354381","https://openalex.org/W2256016639","https://openalex.org/W2270303516","https://openalex.org/W3098304617","https://openalex.org/W6694104584"],"related_works":["https://openalex.org/W2093932542","https://openalex.org/W4402567428","https://openalex.org/W2043256480","https://openalex.org/W2172231381","https://openalex.org/W1983406990","https://openalex.org/W2106924416","https://openalex.org/W2772505697","https://openalex.org/W3083501552","https://openalex.org/W2400191746","https://openalex.org/W2484239316"],"abstract_inverted_index":{"Whole":[0],"exome":[1],"sequencing":[2],"(WES)":[3],"is":[4],"a":[5,17,40,45],"widely":[6],"used":[7,90],"technique":[8],"in":[9,135],"both":[10],"medical":[11],"studies":[12,20],"and":[13,87,119,123],"clinical":[14,136],"practice.":[15],"However,":[16],"number":[18],"of":[19,52,69,94,133],"show":[21],"that":[22,99],"the":[23,50,67,70,102,130],"results":[24,56,97,128],"produced":[25],"by":[26,54],"different":[27],"WES":[28],"analysis":[29],"pipelines":[30,61],"are":[31],"not":[32],"always":[33],"homogeneous.":[34],"To":[35,65],"this":[36],"end,":[37],"we":[38],"propose":[39],"method":[41],"(called":[42],"Genomedics)":[43],"using":[44],"consensus":[46],"approach":[47],"to":[48,76,112],"expand":[49],"list":[51],"variants":[53],"combining":[55],"called":[57],"from":[58,116],"six":[59],"separate":[60],"with":[62],"sensitive":[63],"options.":[64],"evaluate":[66],"performance":[68],"proposed":[71],"method,":[72],"Gemomedics":[73],"was":[74,89],"compared":[75],"seven":[77,106],"existing":[78],"methods":[79],"when":[80],"they":[81],"were":[82],"tested":[83],"on":[84],"two":[85],"datasets":[86],"F1-score":[88],"as":[91],"an":[92],"indicator":[93],"accuracy.":[95],"The":[96,127],"showed":[98],"Genomedics":[100,111,134],"has":[101],"highest":[103],"score":[104],"among":[105],"methods.":[107],"We":[108],"also":[109],"applied":[110],"analyze":[113],"whole":[114],"exomes":[115],"Multiple":[117],"Myeloma":[118],"Dravet":[120],"syndrome":[121],"patients":[122],"found":[124],"interesting":[125],"results.":[126],"demonstrate":[129],"promising":[131],"applications":[132],"studies.":[137]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
