{"id":"https://openalex.org/W3111855535","doi":"https://doi.org/10.1109/jstsp.2021.3061251","title":"Application of Tensor Decomposition to Gene Expression of Infection of Mouse Hepatitis Virus Can Identify Critical Human Genes and Efffective Drugs for SARS-CoV-2 Infection","display_name":"Application of Tensor Decomposition to Gene Expression of Infection of Mouse Hepatitis Virus Can Identify Critical Human Genes and Efffective Drugs for SARS-CoV-2 Infection","publication_year":2021,"publication_date":"2021-02-23","ids":{"openalex":"https://openalex.org/W3111855535","doi":"https://doi.org/10.1109/jstsp.2021.3061251","mag":"3111855535","pmid":"https://pubmed.ncbi.nlm.nih.gov/34812273"},"language":"en","primary_location":{"id":"doi:10.1109/jstsp.2021.3061251","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jstsp.2021.3061251","pdf_url":null,"source":{"id":"https://openalex.org/S42167783","display_name":"IEEE Journal of Selected Topics in Signal Processing","issn_l":"1932-4553","issn":["1932-4553","1941-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Selected Topics in Signal Processing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1109/jstsp.2021.3061251","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045603108","display_name":"Y\u2010h. Taguchi","orcid":"https://orcid.org/0000-0003-0867-8986"},"institutions":[{"id":"https://openalex.org/I96679780","display_name":"Chuo University","ror":"https://ror.org/03qvqb743","country_code":"JP","type":"education","lineage":["https://openalex.org/I96679780"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Y-H. Taguchi","raw_affiliation_strings":["Department of Physics, Chuo University, Tokyo, Japan","[Department of Physics, Chuo University, Tokyo, Japan]"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Chuo University, Tokyo, Japan","institution_ids":["https://openalex.org/I96679780"]},{"raw_affiliation_string":"[Department of Physics, Chuo University, Tokyo, Japan]","institution_ids":["https://openalex.org/I96679780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007548463","display_name":"Turki Turki","orcid":"https://orcid.org/0000-0002-9491-2435"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Turki Turki","raw_affiliation_strings":["Department of Computer Science, King Abdulaziz University, Jeddah, Saudi Arabia","(Department of Computer Science, King Abdulaziz University, Jeddah, Saudi Arabia)"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]},{"raw_affiliation_string":"(Department of Computer Science, King Abdulaziz University, Jeddah, Saudi Arabia)","institution_ids":["https://openalex.org/I185163786"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5045603108"],"corresponding_institution_ids":["https://openalex.org/I96679780"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00284666,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"15","issue":"3","first_page":"746","last_page":"758"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12303","display_name":"Tensor decomposition and applications","score":0.9455000162124634,"subfield":{"id":"https://openalex.org/subfields/2605","display_name":"Computational Mathematics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.682500958442688},{"id":"https://openalex.org/keywords/mouse-hepatitis-virus","display_name":"Mouse hepatitis virus","score":0.6659545302391052},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.6623992323875427},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.6070195436477661},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5882958769798279},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5511656403541565},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5022146701812744},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.47676020860671997},{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.42279064655303955},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.2884892225265503},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.2160835862159729},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19963279366493225},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1702316403388977},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.15999910235404968},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.12355735898017883}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.682500958442688},{"id":"https://openalex.org/C2779567548","wikidata":"https://www.wikidata.org/wiki/Q18907882","display_name":"Mouse hepatitis virus","level":5,"score":0.6659545302391052},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.6623992323875427},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.6070195436477661},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5882958769798279},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5511656403541565},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5022146701812744},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.47676020860671997},{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.42279064655303955},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.2884892225265503},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.2160835862159729},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19963279366493225},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1702316403388977},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.15999910235404968},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.12355735898017883},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/jstsp.2021.3061251","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jstsp.2021.3061251","pdf_url":null,"source":{"id":"https://openalex.org/S42167783","display_name":"IEEE Journal of Selected Topics in Signal Processing","issn_l":"1932-4553","issn":["1932-4553","1941-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Selected Topics in Signal Processing","raw_type":"journal-article"},{"id":"pmid:34812273","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34812273","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of selected topics in signal processing","raw_type":null},{"id":"mag:3111855535","is_oa":false,"landing_page_url":"https://www.preprints.org/manuscript/202004.0431/v3","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1109/jstsp.2021.3061251","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jstsp.2021.3061251","pdf_url":null,"source":{"id":"https://openalex.org/S42167783","display_name":"IEEE Journal of Selected Topics in Signal Processing","issn_l":"1932-4553","issn":["1932-4553","1941-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Selected Topics in Signal Processing","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8299999833106995,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2465763512","display_name":null,"funder_award_id":"20H04848, and 20K12067","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2877933479","display_name":null,"funder_award_id":"20K12067","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2983449479","display_name":null,"funder_award_id":"Scientific Research","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3459562248","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6390236526","display_name":null,"funder_award_id":"KEP-8-611-38","funder_id":"https://openalex.org/F4320322322","funder_display_name":"King Abdulaziz University"},{"id":"https://openalex.org/G6642922373","display_name":null,"funder_award_id":"19H05270","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7792163140","display_name":null,"funder_award_id":"Scientific Research (DSR)","funder_id":"https://openalex.org/F4320322322","funder_display_name":"King Abdulaziz University"},{"id":"https://openalex.org/G8941651429","display_name":null,"funder_award_id":"20H04848","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320322322","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1902198732","https://openalex.org/W2005953436","https://openalex.org/W2016021454","https://openalex.org/W2022056231","https://openalex.org/W2024840436","https://openalex.org/W2039218022","https://openalex.org/W2044549602","https://openalex.org/W2045224435","https://openalex.org/W2047325204","https://openalex.org/W2085645083","https://openalex.org/W2138784029","https://openalex.org/W2345356016","https://openalex.org/W2614621885","https://openalex.org/W2766932388","https://openalex.org/W2897042812","https://openalex.org/W2904912734","https://openalex.org/W2913422047","https://openalex.org/W2928665623","https://openalex.org/W2996166810","https://openalex.org/W3008142620","https://openalex.org/W3009912996","https://openalex.org/W3010955108","https://openalex.org/W3011072970","https://openalex.org/W3021196615","https://openalex.org/W3022285953","https://openalex.org/W3044957374","https://openalex.org/W3045996070","https://openalex.org/W4241513149","https://openalex.org/W6776096842","https://openalex.org/W6792616675"],"related_works":["https://openalex.org/W3037369303","https://openalex.org/W3130823823","https://openalex.org/W3106935950","https://openalex.org/W3208707496","https://openalex.org/W3130228814","https://openalex.org/W3025794751","https://openalex.org/W3142505684","https://openalex.org/W3144009688","https://openalex.org/W3184807549","https://openalex.org/W3164336908","https://openalex.org/W3163135477","https://openalex.org/W3112702249","https://openalex.org/W3035618009","https://openalex.org/W3042434878","https://openalex.org/W2111473164","https://openalex.org/W2098994842","https://openalex.org/W2592260836","https://openalex.org/W2144861041","https://openalex.org/W2044164674","https://openalex.org/W2868304377"],"abstract_inverted_index":{"To":[0],"better":[1],"understand":[2],"the":[3,12,39,99,108,111],"genes":[4,96,114],"with":[5,11,44,75,142],"altered":[6,67],"expression":[7,35,109],"caused":[8],"by":[9],"infection":[10,46],"novel":[13],"coronavirus":[14,60,90,100],"strain":[15],"SARS-CoV-2":[16],"causing":[17],"COVID-19":[18],"infectious":[19,101],"disease,":[20],"a":[21,33,55,117],"tensor":[22],"decomposition":[23],"(TD)-based":[24],"unsupervised":[25,63],"feature":[26],"extraction":[27],"(FE)":[28],"approach":[29],"was":[30],"applied":[31],"to":[32,85,128,147],"gene":[34],"profile":[36],"dataset":[37],"of":[38,47,58,110,133],"mouse":[40,48],"liver":[41],"and":[42,78],"spleen":[43],"experimental":[45],"hepatitis":[49],"virus,":[50],"which":[51,69,134],"is":[52],"regarded":[53],"as":[54],"suitable":[56],"model":[57],"human":[59],"infection.":[61],"TD-based":[62],"FE":[64],"selected":[65,105,113],"134":[66,95,112],"genes,":[68],"were":[70,125,135],"enriched":[71],"in":[72,89,138],"protein-protein":[73],"interactions":[74],"orf1ab,":[76],"polyprotein,":[77],"3C-like":[79],"protease":[80],"that":[81,93],"are":[82],"well":[83],"known":[84,129],"play":[86],"critical":[87],"roles":[88],"infection,":[91],"suggesting":[92],"these":[94],"can":[97],"represent":[98],"process.":[102],"We":[103],"then":[104],"compounds":[106,124],"targeting":[107],"based":[115],"on":[116],"public":[118],"domain":[119],"database.":[120],"The":[121],"identified":[122],"drug":[123],"mainly":[126],"related":[127],"antiviral":[130],"drugs,":[131],"several":[132],"also":[136],"included":[137],"those":[139],"previously":[140],"screened":[141],"an":[143],"<i>in":[144],"silico</i>":[145],"method":[146],"identify":[148],"candidate":[149],"drugs":[150],"for":[151],"treating":[152],"COVID-19.":[153]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
