{"id":"https://openalex.org/W7124906553","doi":"https://doi.org/10.1109/jsait.2026.3655592","title":"An End-to-End Coding Scheme for DNA-Based Data Storage With Nanopore-Sequenced Reads","display_name":"An End-to-End Coding Scheme for DNA-Based Data Storage With Nanopore-Sequenced Reads","publication_year":2026,"publication_date":"2026-01-01","ids":{"openalex":"https://openalex.org/W7124906553","doi":"https://doi.org/10.1109/jsait.2026.3655592"},"language":null,"primary_location":{"id":"doi:10.1109/jsait.2026.3655592","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jsait.2026.3655592","pdf_url":null,"source":{"id":"https://openalex.org/S4210211895","display_name":"IEEE Journal on Selected Areas in Information Theory","issn_l":"2641-8770","issn":["2641-8770"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal on Selected Areas in Information Theory","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034799688","display_name":"Lorenz Welter","orcid":"https://orcid.org/0000-0002-5135-6731"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lorenz Welter","raw_affiliation_strings":["School of Computation, Information and Technology, Technical University of Munich, Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5135-6731","affiliations":[{"raw_affiliation_string":"School of Computation, Information and Technology, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020767088","display_name":"Roman Sokolovskii","orcid":"https://orcid.org/0000-0002-3156-5923"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Roman Sokolovskii","raw_affiliation_strings":["Department of Computing, Imperial College London, London, U.K"],"raw_orcid":"https://orcid.org/0000-0002-3156-5923","affiliations":[{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037841191","display_name":"Thomas Heinis","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Heinis","raw_affiliation_strings":["Department of Computing, Imperial College London, London, U.K"],"raw_orcid":"https://orcid.org/0000-0002-7470-2123","affiliations":[{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Antonia Wachter-Zeh","orcid":"https://orcid.org/0000-0002-5174-1947"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Antonia Wachter-Zeh","raw_affiliation_strings":["School of Computation, Information and Technology, Technical University of Munich, Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5174-1947","affiliations":[{"raw_affiliation_string":"School of Computation, Information and Technology, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090738616","display_name":"Eirik Rosnes","orcid":"https://orcid.org/0000-0001-8236-6601"},"institutions":[{"id":"https://openalex.org/I2799829267","display_name":"Simula Research Laboratory","ror":"https://ror.org/00vn06n10","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2799829267"]},{"id":"https://openalex.org/I4387153661","display_name":"Simula UiB","ror":"https://ror.org/05kmggt55","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I2799829267","https://openalex.org/I4387153661","https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Eirik Rosnes","raw_affiliation_strings":["Simula UiB, Bergen, Norway"],"raw_orcid":"https://orcid.org/0000-0001-8236-6601","affiliations":[{"raw_affiliation_string":"Simula UiB, Bergen, Norway","institution_ids":["https://openalex.org/I2799829267","https://openalex.org/I4387153661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014522913","display_name":"Alexandre Graell i Amat","orcid":"https://orcid.org/0000-0002-5725-869X"},"institutions":[{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Alexandre Graell i Amat","raw_affiliation_strings":["Department of Electrical Engineering, Chalmers University of Technology, Gothenburg, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-5725-869X","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Chalmers University of Technology, Gothenburg, Sweden","institution_ids":["https://openalex.org/I66862912"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":7.3643,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.92580276,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"7","issue":null,"first_page":"17","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11321","display_name":"Error Correcting Code Techniques","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.002300000051036477,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/randomness","display_name":"Randomness","score":0.5995000004768372},{"id":"https://openalex.org/keywords/concatenation","display_name":"Concatenation (mathematics)","score":0.5640000104904175},{"id":"https://openalex.org/keywords/channel","display_name":"Channel (broadcasting)","score":0.49889999628067017},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.49390000104904175},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.4318000078201294},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.3481999933719635}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6834999918937683},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6432999968528748},{"id":"https://openalex.org/C125112378","wikidata":"https://www.wikidata.org/wiki/Q176640","display_name":"Randomness","level":2,"score":0.5995000004768372},{"id":"https://openalex.org/C87619178","wikidata":"https://www.wikidata.org/wiki/Q126002","display_name":"Concatenation (mathematics)","level":2,"score":0.5640000104904175},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.49889999628067017},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.49390000104904175},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.4318000078201294},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.3481999933719635},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.3361000120639801},{"id":"https://openalex.org/C101722063","wikidata":"https://www.wikidata.org/wiki/Q218825","display_name":"Random access","level":2,"score":0.32820001244544983},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3237999975681305},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.3093999922275543},{"id":"https://openalex.org/C9810830","wikidata":"https://www.wikidata.org/wiki/Q635384","display_name":"Maximum a posteriori estimation","level":3,"score":0.2678000032901764}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/jsait.2026.3655592","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jsait.2026.3655592","pdf_url":null,"source":{"id":"https://openalex.org/S4210211895","display_name":"IEEE Journal on Selected Areas in Information Theory","issn_l":"2641-8770","issn":["2641-8770"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal on Selected Areas in Information Theory","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1878324896","display_name":null,"funder_award_id":"2020-03687","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"},{"id":"https://openalex.org/G2211950258","display_name":null,"funder_award_id":"101115317","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"},{"id":"https://openalex.org/G3109824809","display_name":null,"funder_award_id":"101115389","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6720256766","display_name":null,"funder_award_id":"101115134","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7430070275","display_name":null,"funder_award_id":"2020-03687","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G7662580427","display_name":null,"funder_award_id":"101058035","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7920767441","display_name":null,"funder_award_id":"2023-05065","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G8181333326","display_name":null,"funder_award_id":"101115317","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8963665967","display_name":null,"funder_award_id":"2023-05065","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W1518976047","https://openalex.org/W1522919591","https://openalex.org/W1643629030","https://openalex.org/W1946587648","https://openalex.org/W1974326986","https://openalex.org/W1984248485","https://openalex.org/W1991528082","https://openalex.org/W2010838795","https://openalex.org/W2014680464","https://openalex.org/W2025383314","https://openalex.org/W2045407304","https://openalex.org/W2052976715","https://openalex.org/W2060886353","https://openalex.org/W2061475625","https://openalex.org/W2114487425","https://openalex.org/W2123119950","https://openalex.org/W2157477135","https://openalex.org/W2162980030","https://openalex.org/W2167082268","https://openalex.org/W2170484108","https://openalex.org/W2592122940","https://openalex.org/W2615068531","https://openalex.org/W2788257106","https://openalex.org/W2791982652","https://openalex.org/W2951269465","https://openalex.org/W2955617048","https://openalex.org/W2962809499","https://openalex.org/W2963134372","https://openalex.org/W2972936807","https://openalex.org/W2993276217","https://openalex.org/W3006411219","https://openalex.org/W3008619025","https://openalex.org/W3015526058","https://openalex.org/W3015739952","https://openalex.org/W3042993760","https://openalex.org/W3080465559","https://openalex.org/W3093968171","https://openalex.org/W3097193862","https://openalex.org/W3158992927","https://openalex.org/W3190296759","https://openalex.org/W3197362936","https://openalex.org/W3198701793","https://openalex.org/W3202060848","https://openalex.org/W3216171223","https://openalex.org/W4213456065","https://openalex.org/W4226027997","https://openalex.org/W4231505808","https://openalex.org/W4245811414","https://openalex.org/W4285146809","https://openalex.org/W4285181352","https://openalex.org/W4292092908","https://openalex.org/W4310901960","https://openalex.org/W4312913082","https://openalex.org/W4377287320","https://openalex.org/W4378175706","https://openalex.org/W4382365069","https://openalex.org/W4382365161","https://openalex.org/W4387491019","https://openalex.org/W4388692227","https://openalex.org/W4390576729","https://openalex.org/W4391144496","https://openalex.org/W4391974632","https://openalex.org/W4392175539","https://openalex.org/W4393065964","https://openalex.org/W4394997720","https://openalex.org/W4398150888","https://openalex.org/W4398200026","https://openalex.org/W4407813519"],"related_works":[],"abstract_inverted_index":{"We":[0,12,72,93,132,150],"consider":[1],"error-correcting":[2],"coding":[3,77],"for":[4,128,136,143],"deoxyribonucleic":[5],"acid":[6],"(DNA)-based":[7],"storage":[8,16],"using":[9,157],"nanopore":[10],"sequencing.":[11],"model":[13],"the":[14,24,45,80,112,117,120,129,153,158],"DNA":[15,34,56,60],"channel":[17,22,46,145,167],"as":[18],"a":[19,39,48,96,104,125],"sampling":[20],"noise":[21],"where":[23],"input":[25],"data":[26],"is":[27],"chunked":[28],"into":[29,110],"<italic":[30,52,100],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[31,53,101],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">M</i>":[32],"short":[33],"strands,":[35],"which":[36],"are":[37,62],"copied":[38],"random":[40,49],"number":[41],"of":[42,51,82,119,165],"times,":[43],"and":[44,68,89,116,139,169],"outputs":[47],"selection":[50],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">N</i>":[54],"noisy":[55],"strands.":[57],"The":[58],"retrieved":[59],"reads":[61,183],"prone":[63],"to":[64,122,175],"strand-dependent":[65,113],"insertion,":[66],"deletion,":[67],"substitution":[69],"(IDS)":[70],"errors.":[71],"construct":[73],"an":[74,83,86,90],"index-based":[75],"concatenated":[76],"scheme,":[78],"i.e.,":[79],"concatenation":[81],"outer":[84,130],"code,":[85,88],"index":[87],"inner":[91],"code.":[92],"further":[94],"propose":[95],"low-complexity":[97],"(linear":[98],"in":[99],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">N</i>)":[102],"maximum":[103],"posteriori":[105,126],"probability":[106],"decoder":[107],"that":[108],"takes":[109],"account":[111],"IDS":[114],"errors":[115],"randomness":[118],"drawing":[121],"infer":[123],"symbolwise":[124],"probabilities":[127,138],"decoder.":[131],"present":[133],"Monte-Carlo":[134],"simulations":[135],"information-outage":[137],"frame":[140],"error":[141],"rates":[142],"different":[144],"setups":[146],"on":[147],"experimental":[148],"data.":[149],"finally":[151],"evaluate":[152],"overall":[154],"system":[155],"performance":[156,178],"read/write":[159],"cost":[160],"trade-off.":[161],"A":[162],"powerful":[163],"combination":[164],"tailored":[166],"modeling":[168],"soft":[170],"information":[171],"processing":[172],"allows":[173],"us":[174],"achieve":[176],"excellent":[177],"even":[179],"with":[180],"error-prone":[181],"nanopore-sequenced":[182],"outperforming":[184],"state-of-the-art":[185],"schemes.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2026-01-21T00:00:00"}