{"id":"https://openalex.org/W4413465034","doi":"https://doi.org/10.1109/jsait.2025.3598773","title":"On Achievable Rates Over Noisy Nanopore Channels","display_name":"On Achievable Rates Over Noisy Nanopore Channels","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4413465034","doi":"https://doi.org/10.1109/jsait.2025.3598773"},"language":"en","primary_location":{"id":"doi:10.1109/jsait.2025.3598773","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jsait.2025.3598773","pdf_url":null,"source":{"id":"https://openalex.org/S4210211895","display_name":"IEEE Journal on Selected Areas in Information Theory","issn_l":"2641-8770","issn":["2641-8770"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal on Selected Areas in Information Theory","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087839421","display_name":"V. Arvind Rameshwar","orcid":"https://orcid.org/0000-0002-5284-215X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"V. Arvind Rameshwar","raw_affiliation_strings":["India Urban Data Exchange, SID, Indian Institute of Science, Bengaluru, India"],"affiliations":[{"raw_affiliation_string":"India Urban Data Exchange, SID, Indian Institute of Science, Bengaluru, India","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076051906","display_name":"Nir Weinberger","orcid":"https://orcid.org/0000-0001-6028-8892"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Nir Weinberger","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Technion, Haifa, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Technion, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5087839421"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6146,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.84900136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"6","issue":null,"first_page":"270","last_page":"282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13182","display_name":"Quantum-Dot Cellular Automata","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.6452035307884216},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.5043500661849976},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4816509783267975},{"id":"https://openalex.org/keywords/channel","display_name":"Channel (broadcasting)","score":0.45833781361579895},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.2565743029117584},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.2312297224998474},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.2103196084499359},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1276724636554718}],"concepts":[{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.6452035307884216},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.5043500661849976},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4816509783267975},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.45833781361579895},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.2565743029117584},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.2312297224998474},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.2103196084499359},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1276724636554718},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/jsait.2025.3598773","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jsait.2025.3598773","pdf_url":null,"source":{"id":"https://openalex.org/S4210211895","display_name":"IEEE Journal on Selected Areas in Information Theory","issn_l":"2641-8770","issn":["2641-8770"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal on Selected Areas in Information Theory","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5013039200","display_name":null,"funder_award_id":"1782/22","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1533983758","https://openalex.org/W1967128863","https://openalex.org/W1984812591","https://openalex.org/W2004094275","https://openalex.org/W2020347709","https://openalex.org/W2025383314","https://openalex.org/W2070756547","https://openalex.org/W2074437394","https://openalex.org/W2091371391","https://openalex.org/W2099111195","https://openalex.org/W2101549738","https://openalex.org/W2103188198","https://openalex.org/W2110009858","https://openalex.org/W2114487425","https://openalex.org/W2119486537","https://openalex.org/W2123052937","https://openalex.org/W2140017953","https://openalex.org/W2140129757","https://openalex.org/W2141492231","https://openalex.org/W2153802318","https://openalex.org/W2162980030","https://openalex.org/W2177594196","https://openalex.org/W2346680365","https://openalex.org/W2509017166","https://openalex.org/W2592122940","https://openalex.org/W2788257106","https://openalex.org/W2791982652","https://openalex.org/W2895932209","https://openalex.org/W2899702797","https://openalex.org/W2912673962","https://openalex.org/W2950993016","https://openalex.org/W2951269465","https://openalex.org/W2951783141","https://openalex.org/W2955617048","https://openalex.org/W2962713359","https://openalex.org/W3002408315","https://openalex.org/W3007511329","https://openalex.org/W3015526058","https://openalex.org/W3042993760","https://openalex.org/W3103598778","https://openalex.org/W3106529392","https://openalex.org/W3197362936","https://openalex.org/W3198701793","https://openalex.org/W3199052144","https://openalex.org/W3213101281","https://openalex.org/W4205483176","https://openalex.org/W4210292703","https://openalex.org/W4213456065","https://openalex.org/W4221106659","https://openalex.org/W4285146809","https://openalex.org/W4289655255","https://openalex.org/W4289713190","https://openalex.org/W4312913082","https://openalex.org/W4324149232","https://openalex.org/W4391019539","https://openalex.org/W4398200026","https://openalex.org/W4401693278","https://openalex.org/W4405441324","https://openalex.org/W4406169372"],"related_works":["https://openalex.org/W2774675543","https://openalex.org/W2119052929","https://openalex.org/W2326282944","https://openalex.org/W2330402197","https://openalex.org/W2420153309","https://openalex.org/W3201371206","https://openalex.org/W3175842380","https://openalex.org/W2096970964","https://openalex.org/W2107323267","https://openalex.org/W2589591413"],"abstract_inverted_index":{"In":[0,26,148],"this":[1],"paper,":[2],"we":[3,64,127],"consider":[4,81],"a":[5,10,31,47,162,167],"recent":[6],"channel":[7,24,33,72],"model":[8],"of":[9,54,60,74,85,87,94,111,113,155,161,169],"nanopore":[11,23,77],"sequencer":[12],"proposed":[13],"by":[14,41],"McBain,":[15],"Viterbo,":[16],"and":[17,67,100,106,145],"Saunderson":[18],"(2024),":[19],"termed":[20],"the":[21,52,55,58,71,92,95,101,109,114,119,139,153],"noisy":[22,76],"(NNC).":[25],"essence,":[27],"an":[28,88],"NNC":[29,56],"is":[30,39,98,122,131],"duplication":[32],"with":[34],"structured,":[35],"Markov":[36],"inputs,":[37],"that":[38,129],"corrupted":[40],"memoryless":[42],"noise.":[43,62],"We":[44,79],"first":[45],"discuss":[46],"(tight)":[48],"lower":[49,66],"bound":[50],"on":[51,70],"capacity":[53,73],"in":[57],"absence":[59],"random":[61,102],"Next,":[63],"present":[65],"upper":[68],"bounds":[69],"general":[75],"channels.":[78],"then":[80],"two":[82],"interesting":[83],"regimes":[84],"operation":[86],"NNC:":[89],"first,":[90],"where":[91,108],"memory":[93],"input":[96],"process":[97],"large":[99],"noise":[103],"introduces":[104],"erasures,":[105],"second,":[107],"rate":[110],"measurements":[112],"electric":[115],"current":[116],"(also":[117],"called":[118],"sampling":[120,157],"rate)":[121],"high.":[123],"For":[124],"these":[125],"regimes,":[126],"show":[128],"it":[130],"possible":[132],"to":[133,138],"achieve":[134],"information":[135],"rates":[136,158],"close":[137],"noise-free":[140],"capacity,":[141],"using":[142],"low-complexity":[143],"encoding":[144],"decoding":[146],"schemes.":[147],"particular,":[149],"our":[150],"decoder":[151],"for":[152,172],"regime":[154],"high":[156],"makes":[159],"use":[160],"change-point":[163],"detection":[164],"procedure":[165],"\u2013":[166],"subroutine":[168],"immediate":[170],"relevance":[171],"practitioners.":[173]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}