{"id":"https://openalex.org/W2510855016","doi":"https://doi.org/10.1109/jproc.2016.2590833","title":"De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue","display_name":"De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2510855016","doi":"https://doi.org/10.1109/jproc.2016.2590833","mag":"2510855016"},"language":"en","primary_location":{"id":"doi:10.1109/jproc.2016.2590833","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jproc.2016.2590833","pdf_url":null,"source":{"id":"https://openalex.org/S68686220","display_name":"Proceedings of the IEEE","issn_l":"0018-9219","issn":["0018-9219","1558-2256"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the IEEE","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056926062","display_name":"V\u00e9ronique Jamilloux","orcid":"https://orcid.org/0000-0002-6898-4910"},"institutions":[{"id":"https://openalex.org/I1314251682","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/05y503v71","country_code":"MA","type":"facility","lineage":["https://openalex.org/I1314251682"]},{"id":"https://openalex.org/I4210159263","display_name":"Centre Hospitalier de Versailles","ror":"https://ror.org/053evvt91","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210159263"]}],"countries":["FR","MA"],"is_corresponding":false,"raw_author_name":"Veronique Jamilloux","raw_affiliation_strings":["UR1164 URGI Research Unit in Genomics-Info, INRA, INRA de Versailles, Versailles, France","URGI - Unit\u00e9 de Recherche G\u00e9nomique Info (INRA, Centre de recherche de Versailles, bat.18 Route de Saint Cyr 78000 Versailles - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UR1164 URGI Research Unit in Genomics-Info, INRA, INRA de Versailles, Versailles, France","institution_ids":["https://openalex.org/I1314251682"]},{"raw_affiliation_string":"URGI - Unit\u00e9 de Recherche G\u00e9nomique Info (INRA, Centre de recherche de Versailles, bat.18 Route de Saint Cyr 78000 Versailles - France)","institution_ids":["https://openalex.org/I4210159263"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006544717","display_name":"Josquin Daron","orcid":"https://orcid.org/0000-0003-3914-5998"},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210138126","display_name":"G\u00e9n\u00e9tique, Diversit\u00e9, \u00c9cophysiologie des C\u00e9r\u00e9ales","ror":"https://ror.org/04397qy32","country_code":"FR","type":"facility","lineage":["https://openalex.org/I198244214","https://openalex.org/I4210088668","https://openalex.org/I4210138126","https://openalex.org/I4210147682"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Josquin Daron","raw_affiliation_strings":["UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Universit\u00e9 Blaise Pascal, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France","GDEC - G\u00e9n\u00e9tique Diversit\u00e9 et Ecophysiologie des C\u00e9r\u00e9ales (Site INRAE Crou\u00ebl : 5, Chemin de Beaulieu, 63039 Clermont-Ferrand // Site Clermont : Campus Universitaire des C\u00e9zeaux, TSA 60026, 1 Impasse Am\u00e9lie Murat, 63178 Aubi\u00e8re - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Universit\u00e9 Blaise Pascal, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France","institution_ids":["https://openalex.org/I4210138126"]},{"raw_affiliation_string":"GDEC - G\u00e9n\u00e9tique Diversit\u00e9 et Ecophysiologie des C\u00e9r\u00e9ales (Site INRAE Crou\u00ebl : 5, Chemin de Beaulieu, 63039 Clermont-Ferrand // Site Clermont : Campus Universitaire des C\u00e9zeaux, TSA 60026, 1 Impasse Am\u00e9lie Murat, 63178 Aubi\u00e8re - France)","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210088668","https://openalex.org/I4210138126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045785818","display_name":"Fr\u00e9d\u00e9ric Choulet","orcid":"https://orcid.org/0000-0003-1788-7288"},"institutions":[{"id":"https://openalex.org/I198244214","display_name":"Universit\u00e9 Clermont Auvergne","ror":"https://ror.org/01a8ajp46","country_code":"FR","type":"education","lineage":["https://openalex.org/I198244214"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210138126","display_name":"G\u00e9n\u00e9tique, Diversit\u00e9, \u00c9cophysiologie des C\u00e9r\u00e9ales","ror":"https://ror.org/04397qy32","country_code":"FR","type":"facility","lineage":["https://openalex.org/I198244214","https://openalex.org/I4210088668","https://openalex.org/I4210138126","https://openalex.org/I4210147682"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Frederic Choulet","raw_affiliation_strings":["UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Universit\u00e9 Blaise Pascal, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France","GDEC - G\u00e9n\u00e9tique Diversit\u00e9 et Ecophysiologie des C\u00e9r\u00e9ales (Site INRAE Crou\u00ebl : 5, Chemin de Beaulieu, 63039 Clermont-Ferrand // Site Clermont : Campus Universitaire des C\u00e9zeaux, TSA 60026, 1 Impasse Am\u00e9lie Murat, 63178 Aubi\u00e8re - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Universit\u00e9 Blaise Pascal, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France","institution_ids":["https://openalex.org/I4210138126"]},{"raw_affiliation_string":"GDEC - G\u00e9n\u00e9tique Diversit\u00e9 et Ecophysiologie des C\u00e9r\u00e9ales (Site INRAE Crou\u00ebl : 5, Chemin de Beaulieu, 63039 Clermont-Ferrand // Site Clermont : Campus Universitaire des C\u00e9zeaux, TSA 60026, 1 Impasse Am\u00e9lie Murat, 63178 Aubi\u00e8re - France)","institution_ids":["https://openalex.org/I198244214","https://openalex.org/I4210088668","https://openalex.org/I4210138126"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000828591","display_name":"Hadi Quesneville","orcid":"https://orcid.org/0000-0003-3001-4908"},"institutions":[{"id":"https://openalex.org/I1314251682","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/05y503v71","country_code":"MA","type":"facility","lineage":["https://openalex.org/I1314251682"]},{"id":"https://openalex.org/I4210159263","display_name":"Centre Hospitalier de Versailles","ror":"https://ror.org/053evvt91","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210159263"]}],"countries":["FR","MA"],"is_corresponding":false,"raw_author_name":"Hadi Quesneville","raw_affiliation_strings":["UR1164 URGI Research Unit in Genomics-Info, INRA, INRA de Versailles, Versailles, France","URGI - Unit\u00e9 de Recherche G\u00e9nomique Info (INRA, Centre de recherche de Versailles, bat.18 Route de Saint Cyr 78000 Versailles - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UR1164 URGI Research Unit in Genomics-Info, INRA, INRA de Versailles, Versailles, France","institution_ids":["https://openalex.org/I1314251682"]},{"raw_affiliation_string":"URGI - Unit\u00e9 de Recherche G\u00e9nomique Info (INRA, Centre de recherche de Versailles, bat.18 Route de Saint Cyr 78000 Versailles - France)","institution_ids":["https://openalex.org/I4210159263"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":5.7726,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.95019853,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.856835126876831},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7961122989654541},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.744489848613739},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6213486194610596},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.5643836259841919},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5628871321678162},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.5161401033401489},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.498171329498291},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4611402451992035},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.44532105326652527},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4064413607120514},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2016935646533966}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.856835126876831},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7961122989654541},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.744489848613739},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6213486194610596},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.5643836259841919},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5628871321678162},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.5161401033401489},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.498171329498291},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4611402451992035},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.44532105326652527},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4064413607120514},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2016935646533966},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/jproc.2016.2590833","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jproc.2016.2590833","pdf_url":null,"source":{"id":"https://openalex.org/S68686220","display_name":"Proceedings of the IEEE","issn_l":"0018-9219","issn":["0018-9219","1558-2256"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the IEEE","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-02622009v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02622009","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the IEEE, 2017, 105 (3), pp.474-481. &#x27E8;10.1109/JPROC.2016.2590833&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-02734406v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02734406","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://wiki.cyverse.org/wiki/pages/viewpage.action?pageId=29823823","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:HAL:hal-02785776v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02785776","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://pag.confex.com/pag/xxv/meetingapp.cgi","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:prodinra.inra.fr:482006","is_oa":false,"landing_page_url":"http://prodinra.inra.fr/record/482006","pdf_url":null,"source":{"id":"https://openalex.org/S4306400794","display_name":"Prodinra (INRA Bordeaux-Aquitaine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088668","host_organization_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","host_organization_lineage":["https://openalex.org/I4210088668"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2017; PAG XXV - Plant and Animal Genome Conference, San Diego, USA, 2017-01-14-2017-01-14,","raw_type":"PROCEEDING_PAPER"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1969079198","https://openalex.org/W2001402566","https://openalex.org/W2003010041","https://openalex.org/W2009692914","https://openalex.org/W2014704298","https://openalex.org/W2021344630","https://openalex.org/W2022438258","https://openalex.org/W2033049603","https://openalex.org/W2033174994","https://openalex.org/W2033218878","https://openalex.org/W2039752257","https://openalex.org/W2054254276","https://openalex.org/W2055501640","https://openalex.org/W2059864757","https://openalex.org/W2078101442","https://openalex.org/W2083697678","https://openalex.org/W2085708372","https://openalex.org/W2093176323","https://openalex.org/W2099762535","https://openalex.org/W2100245073","https://openalex.org/W2101875628","https://openalex.org/W2112814753","https://openalex.org/W2118059471","https://openalex.org/W2122954888","https://openalex.org/W2128606612","https://openalex.org/W2140602911","https://openalex.org/W2143464518","https://openalex.org/W2144268209","https://openalex.org/W2151899848","https://openalex.org/W2156095709","https://openalex.org/W2156873474","https://openalex.org/W2161479301","https://openalex.org/W2162531367","https://openalex.org/W2162759662","https://openalex.org/W2164631613","https://openalex.org/W2169123200","https://openalex.org/W2171158206","https://openalex.org/W2253153097","https://openalex.org/W2436899892","https://openalex.org/W4297073864"],"related_works":["https://openalex.org/W4210830088","https://openalex.org/W2767590279","https://openalex.org/W2162782320","https://openalex.org/W3088056938","https://openalex.org/W2503209723","https://openalex.org/W1975465622","https://openalex.org/W2258656762","https://openalex.org/W4321594408","https://openalex.org/W2958893719","https://openalex.org/W2002883632"],"abstract_inverted_index":{"Transposable":[0],"elements":[1],"(TEs)":[2],"constitute":[3],"the":[4,8,21,25,47,54,62,65,69,79,107,141,167,171,180,184],"most":[5],"dynamic":[6],"and":[7,24,40,140,169,194,209,219],"largest":[9],"component":[10],"of":[11,20,64,68,78,102,126,143,174,179,186,217],"large":[12,116],"plant":[13,117],"genomes:":[14],"for":[15,89,110,160,214],"example,":[16],"80%":[17],"to":[18,52,120,138,151,191,200,206],"90%":[19],"maize":[22],"genome":[23,27,134],"wheat":[26],"may":[28],"be":[29],"TEs.":[30],"De":[31],"novo":[32,112,131],"TE":[33,113,162,212],"annotation":[34,121,213],"is":[35,74],"therefore":[36],"a":[37,94,124,215],"computational":[38],"challenge,":[39],"we":[41],"investigated,":[42],"using":[43],"current":[44,108],"tools":[45],"in":[46,92,115],"REPET":[48],"package,":[49],"new":[50,158],"strategies":[51,88,104],"overcome":[53,106],"difficulties.":[55],"We":[56,84,154],"tested":[57],"our":[58,103,129],"methodological":[59],"developments":[60],"on":[61,123],"sequence":[63],"chromosome":[66,73],"3B":[67],"hexaploid":[70],"wheat;":[71],"this":[72],"~1":[75],"Gb,":[76],"one":[77],"\u201cfattest\u201d":[80],"genomes":[81],"ever":[82],"sequenced.":[83],"successfully":[85],"established":[86],"various":[87],"annotating":[90],"TEs":[91],"such":[93],"complex":[95],"dataset.":[96],"Our":[97],"analyses":[98],"show":[99],"that":[100,176],"all":[101],"can":[105],"limitations":[109],"de":[111,130],"discovery":[114],"genomes.":[118],"Relative":[119],"based":[122],"library":[125],"known":[127],"TEs,":[128],"approaches":[132],"improved":[133],"coverage":[135],"(from":[136],"84%":[137],"90%),":[139],"number":[142,185,216],"full":[144],"length":[145],"annotated":[146],"copies":[147],"from":[148,188,198],"14":[149],"830":[150],"15":[152],"905.":[153],"also":[155],"developed":[156],"two":[157],"metrics":[159],"qualifying":[161],"annotation:":[163],"NTE50":[164,182],"involves":[165],"measuring":[166],"number,":[168],"LTE50":[170,195],"smallest":[172],"sizes":[173],"annotations":[175,187],"cover":[177],"50%":[178],"genome.":[181],"decreased":[183],"124":[189],"868":[190],"93":[192],"633":[193],"increased":[196],"it":[197],"1839":[199],"2659.":[201],"This":[202],"work":[203],"shows":[204],"how":[205],"obtain":[207],"comprehensive":[208],"high-quality":[210],"automatic":[211],"economically":[218],"agronomically":[220],"important":[221],"species.":[222]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
