{"id":"https://openalex.org/W4253751508","doi":"https://doi.org/10.1109/jcdl.2003.1204848","title":"Protein association discovery in biomedical literature","display_name":"Protein association discovery in biomedical literature","publication_year":2004,"publication_date":"2004-01-23","ids":{"openalex":"https://openalex.org/W4253751508","doi":"https://doi.org/10.1109/jcdl.2003.1204848"},"language":"en","primary_location":{"id":"doi:10.1109/jcdl.2003.1204848","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jcdl.2003.1204848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2003 Joint Conference on Digital Libraries, 2003. Proceedings.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083333053","display_name":"Tueyu Fu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tueyu Fu","raw_affiliation_strings":["Laboratory of Applied Informatics Research, Indiana University, Bloomington, USA"],"affiliations":[{"raw_affiliation_string":"Laboratory of Applied Informatics Research, Indiana University, Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068153957","display_name":"Javad Mostafa","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Mostafa","raw_affiliation_strings":["Laboratory of Applied Informatics Research, Indiana University, Bloomington, USA"],"affiliations":[{"raw_affiliation_string":"Laboratory of Applied Informatics Research, Indiana University, Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070461946","display_name":"Kojiro Seki","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Seki","raw_affiliation_strings":["Laboratory of Applied Informatics Research, Indiana University, Bloomington, USA"],"affiliations":[{"raw_affiliation_string":"Laboratory of Applied Informatics Research, Indiana University, Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5083333053"],"corresponding_institution_ids":["https://openalex.org/I4210119109"],"apc_list":null,"apc_paid":null,"fwci":0.1169,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.50616275,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"113","last_page":"115"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.9000608921051025},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6912940740585327},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5824780464172363},{"id":"https://openalex.org/keywords/association-rule-learning","display_name":"Association rule learning","score":0.542686939239502},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4777628481388092},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42858532071113586},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.4201497435569763},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34453368186950684},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2627251148223877},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10890129208564758}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.9000608921051025},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6912940740585327},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5824780464172363},{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.542686939239502},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4777628481388092},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42858532071113586},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.4201497435569763},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34453368186950684},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2627251148223877},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10890129208564758},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/jcdl.2003.1204848","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jcdl.2003.1204848","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2003 Joint Conference on Digital Libraries, 2003. Proceedings.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1508431184","https://openalex.org/W1592053870","https://openalex.org/W1623080549","https://openalex.org/W1980860611","https://openalex.org/W1983453172","https://openalex.org/W2003463482","https://openalex.org/W2128759588","https://openalex.org/W2147152072","https://openalex.org/W2165546582","https://openalex.org/W2325227998","https://openalex.org/W6630433919","https://openalex.org/W6635275303","https://openalex.org/W6645896537","https://openalex.org/W6678751667"],"related_works":["https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2898682754","https://openalex.org/W2889841093","https://openalex.org/W2151082141","https://openalex.org/W2365236913","https://openalex.org/W3194374240","https://openalex.org/W2392697706","https://openalex.org/W366033468"],"abstract_inverted_index":{"Protein":[0],"association":[1],"discovery":[2],"can":[3],"directly":[4],"contribute":[5],"toward":[6],"developing":[7],"protein":[8],"pathways;":[9],"hence":[10],"it":[11],"is":[12],"a":[13,40,76],"significant":[14],"problem":[15],"in":[16,49,90],"bioinformatics.":[17],"LUCAS":[18],"(Library":[19],"of":[20,52,66,71,78],"User-Oriented":[21],"Concepts":[22],"for":[23,62],"Access":[24],"Services)":[25],"was":[26],"designed":[27],"to":[28,45],"automatically":[29,63],"extract":[30],"and":[31,82],"determine":[32],"associations":[33,93],"among":[34,94],"proteins":[35],"from":[36],"biomedical":[37],"literature.":[38],"Such":[39],"tool":[41],"has":[42,84],"notable":[43],"potential":[44],"automate":[46],"database":[47,89],"construction":[48],"biomedicine,":[50],"instead":[51],"relying":[53],"on":[54,59,75],"experts'":[55],"analysis.":[56],"We":[57],"report":[58],"the":[60,72,92],"mechanisms":[61],"generating":[64],"clusters":[65],"proteins.":[67],"A":[68],"formal":[69],"evaluation":[70],"system,":[73],"based":[74],"subset":[77],"2000":[79],"MEDLINE":[80],"titles":[81],"abstracts,":[83],"been":[85],"conducted":[86],"against":[87],"Swiss-Prot":[88],"which":[91],"concepts":[95],"are":[96],"entered":[97],"by":[98],"experts":[99],"manually.":[100]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
