{"id":"https://openalex.org/W4415624344","doi":"https://doi.org/10.1109/jbhi.2025.3625980","title":"Identification of Pandemic Risk for Avian Influenza Virus With Graph Cross Attention Networks","display_name":"Identification of Pandemic Risk for Avian Influenza Virus With Graph Cross Attention Networks","publication_year":2025,"publication_date":"2025-10-28","ids":{"openalex":"https://openalex.org/W4415624344","doi":"https://doi.org/10.1109/jbhi.2025.3625980","pmid":"https://pubmed.ncbi.nlm.nih.gov/41150231"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3625980","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3625980","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1109/jbhi.2025.3625980","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103008015","display_name":"Jiahao Shen","orcid":"https://orcid.org/0000-0003-3072-7879"},"institutions":[{"id":"https://openalex.org/I37987034","display_name":"Guangzhou University","ror":"https://ror.org/05ar8rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I37987034"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahao Shen","raw_affiliation_strings":["Institute of Computing Science and Technology, Guangzhou University, Guangzhou, China"],"raw_orcid":"https://orcid.org/0009-0007-4248-0144","affiliations":[{"raw_affiliation_string":"Institute of Computing Science and Technology, Guangzhou University, Guangzhou, China","institution_ids":["https://openalex.org/I37987034"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030507545","display_name":"Xiaoli Qiang","orcid":"https://orcid.org/0000-0001-9328-0774"},"institutions":[{"id":"https://openalex.org/I37987034","display_name":"Guangzhou University","ror":"https://ror.org/05ar8rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I37987034"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoli Qiang","raw_affiliation_strings":["School of Computer Science and Network Engineering, Guangzhou University, Guangzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-9328-0774","affiliations":[{"raw_affiliation_string":"School of Computer Science and Network Engineering, Guangzhou University, Guangzhou, China","institution_ids":["https://openalex.org/I37987034"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100674172","display_name":"Yaohua Liu","orcid":"https://orcid.org/0000-0002-5867-5065"},"institutions":[{"id":"https://openalex.org/I37987034","display_name":"Guangzhou University","ror":"https://ror.org/05ar8rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I37987034"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaohua Liu","raw_affiliation_strings":["Institute of Computing Science and Technology, Guangzhou University, Guangzhou, China"],"raw_orcid":"https://orcid.org/0009-0003-6954-2115","affiliations":[{"raw_affiliation_string":"Institute of Computing Science and Technology, Guangzhou University, Guangzhou, China","institution_ids":["https://openalex.org/I37987034"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023551519","display_name":"Qura Tul Ain","orcid":"https://orcid.org/0000-0003-4442-4756"},"institutions":[{"id":"https://openalex.org/I37987034","display_name":"Guangzhou University","ror":"https://ror.org/05ar8rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I37987034"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qura Tul Ain","raw_affiliation_strings":["Institute of Computing Science and Technology, Guangzhou University, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Science and Technology, Guangzhou University, Guangzhou, China","institution_ids":["https://openalex.org/I37987034"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081956455","display_name":"Zheng Kou","orcid":"https://orcid.org/0000-0003-4758-2872"},"institutions":[{"id":"https://openalex.org/I37987034","display_name":"Guangzhou University","ror":"https://ror.org/05ar8rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I37987034"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Kou","raw_affiliation_strings":["Institute of Computing Science and Technology, Guangzhou University, Guangzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-4758-2872","affiliations":[{"raw_affiliation_string":"Institute of Computing Science and Technology, Guangzhou University, Guangzhou, China","institution_ids":["https://openalex.org/I37987034"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I37987034"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.33622843,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"30","issue":"5","first_page":"4002","last_page":"4012"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.3456999957561493,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.3456999957561493,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.14659999310970306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.10270000249147415,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reassortment","display_name":"Reassortment","score":0.772599995136261},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.6618000268936157},{"id":"https://openalex.org/keywords/influenza-a-virus","display_name":"Influenza A virus","score":0.5425999760627747},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5181000232696533},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5098999738693237},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47510001063346863},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.43389999866485596},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.4235999882221222},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3887999951839447}],"concepts":[{"id":"https://openalex.org/C16154277","wikidata":"https://www.wikidata.org/wiki/Q2004399","display_name":"Reassortment","level":5,"score":0.772599995136261},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.6618000268936157},{"id":"https://openalex.org/C2777546802","wikidata":"https://www.wikidata.org/wiki/Q834390","display_name":"Influenza A virus","level":3,"score":0.5425999760627747},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5181000232696533},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5098999738693237},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47510001063346863},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4359999895095825},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.43389999866485596},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.4235999882221222},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4115999937057495},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3977999985218048},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3912000060081482},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3887999951839447},{"id":"https://openalex.org/C3018061469","wikidata":"https://www.wikidata.org/wiki/Q2723958","display_name":"Pandemic influenza","level":5,"score":0.34470000863075256},{"id":"https://openalex.org/C519248777","wikidata":"https://www.wikidata.org/wiki/Q160122","display_name":"Influenza A virus subtype H5N1","level":3,"score":0.32109999656677246},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.30809998512268066},{"id":"https://openalex.org/C107023163","wikidata":"https://www.wikidata.org/wiki/Q143089","display_name":"Gene flow","level":4,"score":0.3052999973297119},{"id":"https://openalex.org/C21833749","wikidata":"https://www.wikidata.org/wiki/Q7189431","display_name":"Viral phylodynamics","level":4,"score":0.29089999198913574},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29010000824928284},{"id":"https://openalex.org/C2781416681","wikidata":"https://www.wikidata.org/wiki/Q287246","display_name":"Orthomyxoviridae","level":4,"score":0.28940001130104065},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.2888000011444092},{"id":"https://openalex.org/C3019926118","wikidata":"https://www.wikidata.org/wiki/Q2723958","display_name":"Influenza pandemic","level":5,"score":0.2865999937057495},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.2754000127315521},{"id":"https://openalex.org/C86282344","wikidata":"https://www.wikidata.org/wiki/Q575314","display_name":"Antigenic shift","level":5,"score":0.26339998841285706},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.2572999894618988},{"id":"https://openalex.org/C82988372","wikidata":"https://www.wikidata.org/wiki/Q5628866","display_name":"H5N1 genetic structure","level":5,"score":0.25589999556541443}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001717","descriptor_name":"Birds","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005585","descriptor_name":"Influenza in Birds","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D005585","descriptor_name":"Influenza in Birds","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D009980","descriptor_name":"Influenza A virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D051456","descriptor_name":"Gene Flow","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3625980","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3625980","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:41150231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41150231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1109/jbhi.2025.3625980","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3625980","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3599142821","display_name":null,"funder_award_id":"62473104","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7624371498","display_name":null,"funder_award_id":"62172114","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1921696809","https://openalex.org/W1974728866","https://openalex.org/W1976526581","https://openalex.org/W2020550018","https://openalex.org/W2023119818","https://openalex.org/W2050101857","https://openalex.org/W2073625279","https://openalex.org/W2076626765","https://openalex.org/W2086414208","https://openalex.org/W2102335249","https://openalex.org/W2126294552","https://openalex.org/W2126309815","https://openalex.org/W2154851992","https://openalex.org/W2157423609","https://openalex.org/W2160828336","https://openalex.org/W2163960578","https://openalex.org/W2168175751","https://openalex.org/W2587970647","https://openalex.org/W2619383789","https://openalex.org/W2948065686","https://openalex.org/W2967006879","https://openalex.org/W3013064940","https://openalex.org/W3016074853","https://openalex.org/W3023512202","https://openalex.org/W3048846953","https://openalex.org/W3128443161","https://openalex.org/W3204961752","https://openalex.org/W3210406796","https://openalex.org/W4231203588","https://openalex.org/W4254751698","https://openalex.org/W4285269528","https://openalex.org/W4292266001","https://openalex.org/W4324118152","https://openalex.org/W4378717986","https://openalex.org/W4380988171","https://openalex.org/W4382317738","https://openalex.org/W4389130684","https://openalex.org/W4389239374","https://openalex.org/W4389484429","https://openalex.org/W4395111538","https://openalex.org/W4399278653","https://openalex.org/W4408737479"],"related_works":[],"abstract_inverted_index":{"Influenza":[0],"A":[1],"virus":[2,23,65,86,109],"poses":[3],"a":[4,131,172],"significant":[5],"threat":[6,29],"to":[7,11,30,88,143],"global":[8],"health":[9,32],"due":[10],"its":[12],"high":[13],"mutability":[14],"and":[15,34,121,154],"potential":[16],"for":[17,73,98,175],"pandemics.":[18],"Accurate":[19],"prediction":[20],"of":[21,45,77,85],"influenza":[22,99,108],"pandemic":[24,100,156,176],"risk":[25,44],"can":[26],"mitigate":[27],"their":[28],"public":[31],"systems":[33],"societal":[35],"stability.":[36],"Current":[37],"sequence-based":[38],"deep":[39],"learning":[40],"methods":[41,58],"predict":[42,89,155],"the":[43,52,60,75,82,90,115,124,145,150,160],"viral":[46,53,78,146],"pandemics":[47],"by":[48],"extracting":[49],"features":[50],"from":[51],"genome":[54,147],"sequence.":[55],"However,":[56],"these":[57],"ignore":[59],"gene":[61,83,110,125,151],"flow":[62,84,111,126,152],"between":[63,119,128],"different":[64],"strains":[66,87,129],"through":[67],"genetic":[68,116],"reassortment,":[69],"which":[70],"is":[71],"essential":[72],"understanding":[74],"dynamics":[76],"evolution.":[79],"To":[80],"leverage":[81],"pandemic,":[91],"we":[92],"propose":[93],"Graph":[94,138],"Cross":[95,139],"Attention":[96,140],"Networks":[97],"identification":[101],"(GCAN-Flu).":[102],"GCAN-Flu":[103,167],"begins":[104],"with":[105,149],"constructing":[106],"an":[107],"network":[112],"based":[113,158],"on":[114,159],"reassortment":[117],"relationship":[118],"viruses,":[120],"then":[122],"encodes":[123],"information":[127],"as":[130],"latent":[132],"modal":[133],"representation.":[134],"We":[135],"further":[136],"use":[137],"(GCA)":[141],"layers":[142],"integrate":[144],"sequence":[148],"information,":[153],"risks":[157],"multimodal":[161],"representations.":[162],"Experimental":[163],"results":[164],"demonstrate":[165],"that":[166],"outperforms":[168],"current":[169],"methods,":[170],"providing":[171],"powerful":[173],"tool":[174],"forecasting.":[177]},"counts_by_year":[],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-28T00:00:00"}
