{"id":"https://openalex.org/W4412623449","doi":"https://doi.org/10.1109/jbhi.2025.3592444","title":"Hierarchical Temporal Attention Networks for Cancer Registry Abstraction: Leveraging Longitudinal Clinical Data With Interpretability","display_name":"Hierarchical Temporal Attention Networks for Cancer Registry Abstraction: Leveraging Longitudinal Clinical Data With Interpretability","publication_year":2025,"publication_date":"2025-07-24","ids":{"openalex":"https://openalex.org/W4412623449","doi":"https://doi.org/10.1109/jbhi.2025.3592444","pmid":"https://pubmed.ncbi.nlm.nih.gov/40705572"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3592444","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3592444","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037362113","display_name":"Hong-Jie Dai","orcid":"https://orcid.org/0000-0002-1516-7255"},"institutions":[{"id":"https://openalex.org/I4387154394","display_name":"National Kaohsiung University of Science and Technology","ror":"https://ror.org/00hfj7g70","country_code":null,"type":"education","lineage":["https://openalex.org/I4387154394"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hong-Jie Dai","raw_affiliation_strings":["Intelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan","Department of Electrical Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan"],"raw_orcid":"https://orcid.org/0000-0002-1516-7255","affiliations":[{"raw_affiliation_string":"Intelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan","institution_ids":["https://openalex.org/I4387154394"]},{"raw_affiliation_string":"Department of Electrical Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan","institution_ids":["https://openalex.org/I4387154394"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068682505","display_name":"Han-Hsiang Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I152743029","display_name":"Kaohsiung Medical University","ror":"https://ror.org/03gk81f96","country_code":"TW","type":"education","lineage":["https://openalex.org/I152743029"]},{"id":"https://openalex.org/I4387154394","display_name":"National Kaohsiung University of Science and Technology","ror":"https://ror.org/00hfj7g70","country_code":null,"type":"education","lineage":["https://openalex.org/I4387154394"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Han-Hsiang Wu","raw_affiliation_strings":["Center for Big Data Research, Kaohsiung Medical University, KMUH, Kaohsiung, Taiwan","Department of Electrical Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Big Data Research, Kaohsiung Medical University, KMUH, Kaohsiung, Taiwan","institution_ids":["https://openalex.org/I152743029"]},{"raw_affiliation_string":"Department of Electrical Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan","institution_ids":["https://openalex.org/I4387154394"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07991716,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"30","issue":"2","first_page":"1652","last_page":"1665"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9751999974250793,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.9342542886734009},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7159610986709595},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.6006324887275696},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39716434478759766},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34525424242019653},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.327961266040802},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3275008797645569}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.9342542886734009},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7159610986709595},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.6006324887275696},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39716434478759766},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34525424242019653},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.327961266040802},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3275008797645569},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008137","descriptor_name":"Longitudinal Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008137","descriptor_name":"Longitudinal Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D012042","descriptor_name":"Registries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012042","descriptor_name":"Registries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1109/jbhi.2025.3592444","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3592444","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40705572","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40705572","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null},{"id":"pmh:oai:ir.nhri.org.tw:3990099045/17329","is_oa":false,"landing_page_url":"http://ir.nhri.org.tw/handle/3990099045/17329","pdf_url":null,"source":{"id":"https://openalex.org/S4406922573","display_name":"NHRI Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G589948741","display_name":null,"funder_award_id":"A1100302","funder_id":"https://openalex.org/F4320333462","funder_display_name":"Health Promotion Administration, Ministry of Health and Welfare"}],"funders":[{"id":"https://openalex.org/F4320333462","display_name":"Health Promotion Administration, Ministry of Health and Welfare","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W4312407344","https://openalex.org/W2894289927"],"abstract_inverted_index":{"Cancer":[0],"registration":[1],"is":[2,19],"a":[3,20,44,78,134,171],"vital":[4],"source":[5],"of":[6,28,34,106,129,158],"information":[7,65],"for":[8],"government-driven":[9],"cancer":[10,16,144,176],"prevention":[11],"and":[12,22,56,62,89,116],"control":[13],"policies.":[14],"However,":[15],"registry":[17,177],"abstraction":[18,178],"complex":[21],"labor-intensive":[23],"process,":[24],"requiring":[25],"the":[26,53,86,126,130,149,161,166],"extraction":[27],"structured":[29],"data":[30],"from":[31,179],"large":[32],"volumes":[33],"unstructured":[35,180],"clinical":[36,181],"reports.":[37],"To":[38,74],"address":[39],"these":[40],"challenges,":[41],"we":[42],"propose":[43],"hierarchical":[45],"temporal":[46,61],"attention":[47,50,120,154],"network":[48],"leveraging":[49],"mechanisms":[51],"at":[52,155],"word,":[54],"sentence,":[55],"document":[57],"levels,":[58],"while":[59],"incorporating":[60],"report":[63],"type":[64],"to":[66,84,140],"capture":[67],"nuanced":[68],"relationships":[69],"within":[70],"patients'":[71],"longitudinal":[72,184],"data.":[73],"ensure":[75],"robust":[76],"evaluation,":[77],"stratified":[79],"sampling":[80],"algorithm":[81],"was":[82,138],"developed":[83,139],"balance":[85],"training,":[87],"validation,":[88],"test":[90],"datasets":[91],"across":[92],"23":[93],"coding":[94],"tasks,":[95],"mitigating":[96],"potential":[97],"biases.":[98],"The":[99],"proposed":[100,131,162],"method":[101],"achieved":[102],"an":[103],"average":[104],"F1-score":[105],"0.82,":[107],"outperforming":[108],"existing":[109],"approaches":[110],"by":[111,152],"prioritizing":[112],"task-relevant":[113],"words,":[114],"sentences,":[115],"reports":[117],"through":[118],"its":[119],"mechanism.":[121],"An":[122],"ablation":[123],"study":[124],"confirmed":[125],"critical":[127],"contributions":[128],"components.":[132],"Furthermore,":[133],"prototype":[135],"visualization":[136,168],"tool":[137],"present":[141],"interpretability,":[142],"providing":[143],"registrars":[145],"with":[146,165],"insights":[147],"into":[148],"decision-making":[150],"process":[151],"visualizing":[153],"multiple":[156],"levels":[157],"granularity.":[159],"Overall,":[160],"methods":[163],"combined":[164],"interpretabilityfocused":[167],"tool,":[169],"represent":[170],"significant":[172],"step":[173],"toward":[174],"automating":[175],"text":[182],"in":[183],"settings.":[185]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
