{"id":"https://openalex.org/W4411551788","doi":"https://doi.org/10.1109/jbhi.2025.3582160","title":"Boosting Few-Shot Semantic Segmentation of 3D Medical Images via Collaborative Slice Alignment","display_name":"Boosting Few-Shot Semantic Segmentation of 3D Medical Images via Collaborative Slice Alignment","publication_year":2025,"publication_date":"2025-06-23","ids":{"openalex":"https://openalex.org/W4411551788","doi":"https://doi.org/10.1109/jbhi.2025.3582160","pmid":"https://pubmed.ncbi.nlm.nih.gov/40549529"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3582160","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3582160","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101686887","display_name":"Ran Duan","orcid":"https://orcid.org/0000-0002-0737-887X"},"institutions":[{"id":"https://openalex.org/I4210138186","display_name":"Wuhan National Laboratory for Optoelectronics","ror":"https://ror.org/03c9ncn37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210138186"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ran Duan","raw_affiliation_strings":["Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China","Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]},{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082263233","display_name":"Jialun Pei","orcid":"https://orcid.org/0000-0002-2630-2838"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jialun Pei","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China","Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100688543","display_name":"Zhiwei Wang","orcid":"https://orcid.org/0000-0002-3638-8663"},"institutions":[{"id":"https://openalex.org/I4210138186","display_name":"Wuhan National Laboratory for Optoelectronics","ror":"https://ror.org/03c9ncn37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210138186"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiwei Wang","raw_affiliation_strings":["Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China","Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]},{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017499010","display_name":"Ruiheng Zhang","orcid":"https://orcid.org/0000-0002-1324-4739"},"institutions":[{"id":"https://openalex.org/I4210138186","display_name":"Wuhan National Laboratory for Optoelectronics","ror":"https://ror.org/03c9ncn37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210138186"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruiheng Zhang","raw_affiliation_strings":["Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China","Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]},{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100429992","display_name":"Qiang Li","orcid":"https://orcid.org/0000-0002-6736-3389"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]},{"id":"https://openalex.org/I4210138186","display_name":"Wuhan National Laboratory for Optoelectronics","ror":"https://ror.org/03c9ncn37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210138186"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Li","raw_affiliation_strings":["Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China","Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]},{"raw_affiliation_string":"Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032708386","display_name":"Pheng\u2010Ann Heng","orcid":"https://orcid.org/0000-0003-3055-5034"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pheng-Ann Heng","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China","Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101686887"],"corresponding_institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15979224,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"29","issue":"10","first_page":"7336","last_page":"7348"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10775","display_name":"Generative Adversarial Networks and Image Synthesis","score":0.9757000207901001,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10719","display_name":"3D Shape Modeling and Analysis","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.7502033710479736},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6969776153564453},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6569471955299377},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6343309879302979},{"id":"https://openalex.org/keywords/shot","display_name":"Shot (pellet)","score":0.5736492276191711},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.48934000730514526},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.47740569710731506},{"id":"https://openalex.org/keywords/one-shot","display_name":"One shot","score":0.4762454330921173},{"id":"https://openalex.org/keywords/medical-imaging","display_name":"Medical imaging","score":0.4743719696998596},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38164305686950684},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.1532040536403656}],"concepts":[{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.7502033710479736},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6969776153564453},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6569471955299377},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6343309879302979},{"id":"https://openalex.org/C2778344882","wikidata":"https://www.wikidata.org/wiki/Q278938","display_name":"Shot (pellet)","level":2,"score":0.5736492276191711},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.48934000730514526},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.47740569710731506},{"id":"https://openalex.org/C2992734406","wikidata":"https://www.wikidata.org/wiki/Q413267","display_name":"One shot","level":2,"score":0.4762454330921173},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.4743719696998596},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38164305686950684},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.1532040536403656},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3582160","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3582160","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40549529","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40549529","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W343636949","https://openalex.org/W1901129140","https://openalex.org/W1903029394","https://openalex.org/W2194775991","https://openalex.org/W2321533354","https://openalex.org/W2565639579","https://openalex.org/W2962914239","https://openalex.org/W2963078159","https://openalex.org/W2963420272","https://openalex.org/W2963599420","https://openalex.org/W2963881378","https://openalex.org/W2963904968","https://openalex.org/W2979427035","https://openalex.org/W2979808779","https://openalex.org/W2980255328","https://openalex.org/W2990230185","https://openalex.org/W3002569343","https://openalex.org/W3014974815","https://openalex.org/W3094938797","https://openalex.org/W3097337894","https://openalex.org/W3106906018","https://openalex.org/W3108187451","https://openalex.org/W3120897110","https://openalex.org/W3128566160","https://openalex.org/W3131362130","https://openalex.org/W3158095128","https://openalex.org/W3173809883","https://openalex.org/W3188064562","https://openalex.org/W3216552527","https://openalex.org/W4211030596","https://openalex.org/W4211031152","https://openalex.org/W4214573368","https://openalex.org/W4221153269","https://openalex.org/W4298110661","https://openalex.org/W4312428231","https://openalex.org/W4312443348","https://openalex.org/W4312653100","https://openalex.org/W4312740069","https://openalex.org/W4313196086","https://openalex.org/W4319300548","https://openalex.org/W4382044977","https://openalex.org/W4387211355"],"related_works":["https://openalex.org/W2497720472","https://openalex.org/W4292659306","https://openalex.org/W3044321615","https://openalex.org/W2806221744","https://openalex.org/W2326937258","https://openalex.org/W394267150","https://openalex.org/W2773965352","https://openalex.org/W4294892107","https://openalex.org/W2357748469","https://openalex.org/W2392917037"],"abstract_inverted_index":{"Few-shot":[0],"semantic":[1],"segmentation":[2,39],"(FSS)":[3],"of":[4,22,50,123,218,228],"3D":[5],"medical":[6],"images":[7],"requires":[8],"finding":[9],"a":[10,86,93],"2D":[11],"slice":[12,67,105],"from":[13,125],"the":[14,23,47,51,56,112,120,126,136,160,166,185,198,204,216],"labeled":[15],"volume":[16],"as":[17,144],"support":[18,28,59,66,109,149,178,208],"to":[19,46,54,68,129,172,182,196],"'query'":[20],"slices":[21,29,60,124,150,153],"unlabeled":[24],"one.":[25],"Accurately":[26],"determining":[27],"is":[30],"crucial":[31],"for":[32,147],"learning":[33],"representative":[34],"prototypical":[35],"features,":[36],"thereby":[37],"enhancing":[38],"accuracy.":[40],"The":[41,139],"existing":[42],"methods":[43],"typically":[44],"resort":[45],"true":[48],"position":[49],"query":[52,57,71,104,152,180,210],"target":[53,113],"align":[55],"with":[58],"or":[61],"simply":[62],"exploit":[63],"one":[64],"key":[65],"segment":[69],"all":[70],"slices,":[72],"which":[73,100],"inevitably":[74],"results":[75,213],"in":[76,135],"poor":[77],"practicality":[78],"and":[79,88,151,179,209,220],"mis-segmentation.":[80],"In":[81],"this":[82],"regard,":[83],"we":[84,189],"seek":[85],"practical":[87],"efficient":[89],"solution":[90],"by":[91,203],"proposing":[92],"novel":[94],"Collaborative":[95],"Slice":[96],"Alignment":[97],"(CSA)":[98],"module,":[99],"densely":[101],"assigns":[102],"each":[103,156],"its":[106],"own":[107],"fittest":[108],"without":[110],"knowing":[111],"prior.":[114],"Concretely,":[115],"our":[116],"CSA":[117,171,219],"first":[118],"estimates":[119],"confidence":[121],"scores":[122,141],"sorting":[127],"task":[128],"implicitly":[130],"reflect":[131],"their":[132],"physical":[133],"location":[134],"human":[137],"body.":[138],"estimated":[140],"are":[142],"considered":[143],"spatial":[145],"references":[146],"aligning":[148],"so":[154],"that":[155,215],"matching":[157],"pair":[158],"shares":[159],"most":[161],"similar":[162],"image":[163],"contents.":[164],"Moreover,":[165],"self-learnable":[167],"ranking":[168],"objective":[169],"allows":[170],"transfer":[173],"internal":[174],"knowledge":[175],"into":[176],"both":[177],"features":[181],"further":[183],"boost":[184],"FSS":[186],"performance.":[187],"Additionally,":[188],"introduce":[190],"an":[191,223],"Information":[192],"Reconciliation":[193],"(InRe)":[194],"module":[195],"mitigate":[197],"inconsistent":[199],"feature":[200],"distribution":[201],"caused":[202],"individual":[205],"differences":[206],"between":[207],"images.":[211],"Experimental":[212],"demonstrate":[214],"combination":[217],"InRe":[221],"achieves":[222],"average":[224],"Dice":[225],"score":[226],"improvement":[227],"at":[229],"least":[230],"8.61%":[231],"across":[232],"three":[233],"datasets,":[234],"consistently":[235],"outperforming":[236],"other":[237],"state-of-the-art":[238],"methods.":[239]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}