{"id":"https://openalex.org/W4410770164","doi":"https://doi.org/10.1109/jbhi.2025.3574254","title":"Comparing Text-Based Clinical Risk Prediction in Critical Care: A Note-Specific Hierarchical Network and Large Language Models","display_name":"Comparing Text-Based Clinical Risk Prediction in Critical Care: A Note-Specific Hierarchical Network and Large Language Models","publication_year":2025,"publication_date":"2025-05-27","ids":{"openalex":"https://openalex.org/W4410770164","doi":"https://doi.org/10.1109/jbhi.2025.3574254","pmid":"https://pubmed.ncbi.nlm.nih.gov/40424107"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3574254","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3574254","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1109/jbhi.2025.3574254","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100624484","display_name":"Jinghui Liu","orcid":"https://orcid.org/0000-0002-7945-4165"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jinghui Liu","raw_affiliation_strings":["Australian e-Health Research Centre, CSIRO, Brisbane, QLD, Australia"],"raw_orcid":"https://orcid.org/0000-0002-7945-4165","affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, CSIRO, Brisbane, QLD, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023213398","display_name":"Anthony Nguyen","orcid":"https://orcid.org/0000-0002-6215-6954"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Anthony Nguyen","raw_affiliation_strings":["Australian e-Health Research Centre, CSIRO, Brisbane, QLD, Australia"],"raw_orcid":"https://orcid.org/0000-0002-6215-6954","affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, CSIRO, Brisbane, QLD, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074297656","display_name":"Daniel Capurro","orcid":"https://orcid.org/0000-0002-9256-1256"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Daniel Capurro","raw_affiliation_strings":["School of Computing and Information Systems and Centre for Digital Transformation of Health, University of Melbourne, Melbourne, VIC, Australia","School of Computing and Information Systems and Centre for Digital Transformation of Health, The University of Melbourne, Melbourne, VIC, Australia"],"raw_orcid":"https://orcid.org/0000-0002-9256-1256","affiliations":[{"raw_affiliation_string":"School of Computing and Information Systems and Centre for Digital Transformation of Health, University of Melbourne, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"School of Computing and Information Systems and Centre for Digital Transformation of Health, The University of Melbourne, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067214173","display_name":"Karin Verspoor","orcid":"https://orcid.org/0000-0002-8661-1544"},"institutions":[{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Karin Verspoor","raw_affiliation_strings":["School of Computing Technologies, RMIT University, Melbourne, VIC, Australia"],"raw_orcid":"https://orcid.org/0000-0002-8661-1544","affiliations":[{"raw_affiliation_string":"School of Computing Technologies, RMIT University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I82951845"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":8.2144,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.97100006,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"29","issue":"10","first_page":"7657","last_page":"7667"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9678999781608582,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.910099983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6988140344619751},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5189847350120544},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47348010540008545}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6988140344619751},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5189847350120544},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47348010540008545}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003422","descriptor_name":"Critical Care","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D003422","descriptor_name":"Critical Care","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017052","descriptor_name":"Hospital Mortality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017052","descriptor_name":"Hospital Mortality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3574254","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3574254","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40424107","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40424107","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1109/jbhi.2025.3574254","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3574254","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6899999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1991600719","https://openalex.org/W2002514548","https://openalex.org/W2030498706","https://openalex.org/W2033609349","https://openalex.org/W2082302018","https://openalex.org/W2335231222","https://openalex.org/W2396881363","https://openalex.org/W2625625371","https://openalex.org/W2784499877","https://openalex.org/W2908201961","https://openalex.org/W2930139824","https://openalex.org/W2963716420","https://openalex.org/W2964010366","https://openalex.org/W2997050424","https://openalex.org/W3007211628","https://openalex.org/W3014524604","https://openalex.org/W3035422918","https://openalex.org/W3046375318","https://openalex.org/W3048976663","https://openalex.org/W3130634310","https://openalex.org/W3134867904","https://openalex.org/W3149972283","https://openalex.org/W3174700141","https://openalex.org/W3177617320","https://openalex.org/W4211148787","https://openalex.org/W4213286494","https://openalex.org/W4220708172","https://openalex.org/W4225493996","https://openalex.org/W4282918370","https://openalex.org/W4286567174","https://openalex.org/W4288083420","https://openalex.org/W4296776307","https://openalex.org/W4310568840","https://openalex.org/W4312113143","https://openalex.org/W4319662928","https://openalex.org/W4372352528","https://openalex.org/W4384071683","https://openalex.org/W4384561707","https://openalex.org/W4385606949","https://openalex.org/W4389165057","https://openalex.org/W4391098193","https://openalex.org/W4391221150","https://openalex.org/W4391224221","https://openalex.org/W4391301614","https://openalex.org/W4391876619","https://openalex.org/W4395050972","https://openalex.org/W4395067526","https://openalex.org/W4396519801","https://openalex.org/W4396691546","https://openalex.org/W4399363701","https://openalex.org/W4403420208","https://openalex.org/W4407707262","https://openalex.org/W4408256269"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Clinical":[0,19],"predictive":[1],"analysis":[2],"is":[3,66],"a":[4,21,124,141],"crucial":[5],"task":[6,89],"with":[7,40,80,128,144,162],"numerous":[8],"applications":[9],"and":[10,139,148,159,186,209],"has":[11],"been":[12,26],"extensively":[13],"studied":[14],"using":[15,93],"machine":[16],"learning":[17],"approaches.":[18],"notes,":[20],"vital":[22],"data":[23],"source,":[24],"have":[25],"employed":[27],"to":[28,131,179,234,239],"develop":[29],"natural":[30],"language":[31],"processing":[32],"(NLP)":[33],"models":[34],"for":[35,55,133,217],"risk":[36,87,175,218],"prediction":[37,88,115,176],"in":[38,48,109,202,220],"healthcare":[39,53],"robust":[41],"performance.":[42],"However,":[43],"clinical":[44,96,237],"notes":[45,97,238],"vary":[46],"considerably":[47],"text":[49],"composition-written":[50],"by":[51],"diverse":[52,163],"providers":[54],"different":[56,136],"purposes-and":[57],"the":[58,74,86,110,117,170,213,221,228,241],"impact":[59],"of":[60,99,112,215,243],"these":[61,104],"variations":[62,134],"on":[63,156,194],"NLP":[64],"modeling":[65],"also":[67,70],"underexplored.":[68],"It":[69],"remains":[71],"uncertain":[72],"whether":[73],"recent":[75],"Large":[76],"Language":[77],"Models":[78],"(LLMs)":[79],"instruction-following":[81,153],"capabilities":[82],"can":[83,231],"effectively":[84],"handle":[85],"out-of-the-box,":[90],"especially":[91],"when":[92],"routinely":[94],"collected":[95],"instead":[98],"polished":[100],"text.":[101],"We":[102,150],"address":[103],"two":[105],"important":[106,207],"research":[107],"questions":[108],"context":[111],"in-hospital":[113],"mortality":[114],"within":[116],"critical":[118,196,222],"care":[119],"setting.":[120,223],"Specifically,":[121],"we":[122,225],"propose":[123],"supervised":[125,146,181],"hierarchical":[126],"network":[127,172],"note-specific":[129,171],"modules":[130],"account":[132],"across":[135],"note":[137],"categories,":[138],"provide":[140],"detailed":[142],"comparison":[143],"strong":[145],"baselines":[147,182],"LLMs.":[149],"benchmark":[151],"34":[152],"LLMs":[154,191,216],"based":[155],"zero-shot,":[157],"few-shot,":[158],"chain-of-thought":[160],"prompting":[161],"prompt":[164],"templates.":[165],"Our":[166],"results":[167],"demonstrate":[168],"that":[169,227],"delivers":[173],"improved":[174],"performance":[177],"compared":[178],"established":[180],"from":[183],"both":[184],"measurement-based":[185],"text-based":[187],"modeling.":[188],"In":[189],"contrast,":[190],"consistently":[192],"underperform":[193],"this":[195],"task,":[197],"despite":[198],"their":[199],"remarkable":[200],"performances":[201],"other":[203,244],"domains.":[204],"This":[205],"highlights":[206],"limitations":[208],"raises":[210],"caution":[211],"regarding":[212],"use":[214],"assessment":[219],"Additionally,":[224],"show":[226],"proposed":[229],"model":[230],"be":[232],"leveraged":[233],"select":[235],"informative":[236],"enhance":[240],"training":[242],"models.":[245]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-27T08:28:00.272161","created_date":"2025-10-10T00:00:00"}
