{"id":"https://openalex.org/W4410638917","doi":"https://doi.org/10.1109/jbhi.2025.3573158","title":"Multi-Grained Line Graph Neural Network With Hierarchical Contrastive Learning for Predicting Drug-Disease Associations","display_name":"Multi-Grained Line Graph Neural Network With Hierarchical Contrastive Learning for Predicting Drug-Disease Associations","publication_year":2025,"publication_date":"2025-05-23","ids":{"openalex":"https://openalex.org/W4410638917","doi":"https://doi.org/10.1109/jbhi.2025.3573158","pmid":"https://pubmed.ncbi.nlm.nih.gov/40408216"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3573158","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3573158","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012124066","display_name":"Bao-Min Liu","orcid":"https://orcid.org/0000-0001-9891-4115"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bao-Min Liu","raw_affiliation_strings":["School of Control Science and Engineering, Shandong University, Jinan, China"],"raw_orcid":"https://orcid.org/0000-0001-9891-4115","affiliations":[{"raw_affiliation_string":"School of Control Science and Engineering, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100648398","display_name":"Ling-Yun Dai","orcid":"https://orcid.org/0000-0002-5473-323X"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling-Yun Dai","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0002-5473-323X","affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007539735","display_name":"Junliang Shang","orcid":"https://orcid.org/0000-0002-8488-2228"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junliang Shang","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0002-8488-2228","affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0002-2695-1926","affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026569643","display_name":"Ying-Lian Gao","orcid":"https://orcid.org/0000-0003-0483-5622"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying-Lian Gao","raw_affiliation_strings":["Qufu Normal University Library, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0003-0483-5622","affiliations":[{"raw_affiliation_string":"Qufu Normal University Library, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023736025","display_name":"Rui Gao","orcid":"https://orcid.org/0000-0002-3599-7678"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Gao","raw_affiliation_strings":["School of Control Science and Engineering, Shandong University, Jinan, China"],"raw_orcid":"https://orcid.org/0000-0002-3599-7678","affiliations":[{"raw_affiliation_string":"School of Control Science and Engineering, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073144090","display_name":"Jin\u2010Xing Liu","orcid":"https://orcid.org/0000-0001-6104-2149"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["School of Health and Life Sciences, University of Health and Rehabilitation Sciences, Qingdao, China"],"raw_orcid":"https://orcid.org/0000-0001-6104-2149","affiliations":[{"raw_affiliation_string":"School of Health and Life Sciences, University of Health and Rehabilitation Sciences, Qingdao, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7264,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.73473704,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"30","issue":"6","first_page":"4483","last_page":"4491"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7170140147209167},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.583263635635376},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5415980219841003},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4903995990753174},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42387834191322327},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.41727426648139954},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37523865699768066},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3436374366283417},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2307228446006775},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10817411541938782}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7170140147209167},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.583263635635376},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5415980219841003},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4903995990753174},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42387834191322327},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.41727426648139954},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37523865699768066},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3436374366283417},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2307228446006775},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10817411541938782},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098422","descriptor_name":"Graph Neural Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004358","descriptor_name":"Drug Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3573158","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3573158","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40408216","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40408216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1350247206","display_name":null,"funder_award_id":"62172254","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3938201872","display_name":null,"funder_award_id":"62473179","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2391251536","https://openalex.org/W2961085424","https://openalex.org/W2362198218","https://openalex.org/W2019521278","https://openalex.org/W1984922432","https://openalex.org/W2375008505","https://openalex.org/W1982750869","https://openalex.org/W2085756966","https://openalex.org/W2350679292","https://openalex.org/W2086348228"],"abstract_inverted_index":{"Predicting":[0],"drug-disease":[1,18,86,208],"associations":[2],"is":[3,22,41,96,115,184],"a":[4,23,63,75,85,108,129,159,178],"crucial":[5],"step":[6],"in":[7,43,143,193,206],"drug":[8],"repositioning,":[9],"especially":[10],"with":[11,57],"computational":[12],"methods":[13],"that":[14,121,134],"quickly":[15],"locate":[16],"potential":[17,202],"pairs.":[19],"Heterogenous":[20],"network":[21,113],"common":[24],"tool":[25],"for":[26],"introducing":[27],"multiple":[28],"type":[29,54],"relation":[30,172],"information":[31,56,151],"about":[32],"drugs":[33],"and":[34,152,174],"diseases.":[35],"However,":[36],"the":[37,82,90,100,104,149,166,188,200],"diversity":[38],"of":[39,45,84,103,131,141,190,203],"relations":[40,142],"ignored":[42],"most":[44],"existing":[46],"methods,":[47],"which":[48],"makes":[49],"them":[50],"difficult":[51],"to":[52,67,80,98,117,155,186],"explore":[53],"semantic":[55],"structure":[58,175],"properties.":[59],"Therefore,":[60],"we":[61,73],"propose":[62],"relation-centric":[64,76],"GNN":[65],"framework":[66],"encode":[68],"critical":[69],"association":[70],"patterns.":[71,176],"Firstly,":[72],"utilize":[74],"graph,":[77,79],"line":[78,110],"represent":[81],"context":[83],"pair":[87],"identified":[88],"as":[89,138],"center":[91,105,167],"node.":[92,106],"The":[93],"prediction":[94],"problem":[95],"modeled":[97],"learn":[99],"embedding":[101],"vector":[102],"Secondly,":[107],"multi-grained":[109,164,191],"graph":[111,124],"neural":[112],"(MGLGNN)":[114],"designed":[116],"excavate":[118],"fine-grained":[119],"features":[120,192],"encapsulate":[122],"local":[123,150],"structures.":[125],"We":[126],"theoretically":[127],"define":[128],"handful":[130],"typical":[132,156],"nodes":[133,157],"can":[135],"be":[136],"regarded":[137],"high-order":[139],"abstractions":[140],"each":[144],"type.":[145],"Then,":[146],"MGLGNN":[147],"distills":[148],"passes":[153],"it":[154],"from":[158],"global":[160],"perspective.":[161],"With":[162],"learned":[163],"features,":[165],"node":[168],"automatically":[169],"captures":[170],"heterogenous":[171],"semantics":[173],"Thirdly,":[177],"hierarchical":[179],"contrastive":[180],"learning":[181],"(HCL)":[182],"mechanism":[183],"proposed":[185],"ensure":[187],"quality":[189],"an":[194],"unsupervised":[195],"way.":[196],"Extensive":[197],"experiments":[198],"show":[199],"great":[201],"our":[204],"model":[205],"mining":[207],"associations.":[209]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2025-10-10T00:00:00"}
