{"id":"https://openalex.org/W4410536383","doi":"https://doi.org/10.1109/jbhi.2025.3571801","title":"Sign-Aware Graph Contrastive Learning for Drug Repositioning","display_name":"Sign-Aware Graph Contrastive Learning for Drug Repositioning","publication_year":2025,"publication_date":"2025-05-20","ids":{"openalex":"https://openalex.org/W4410536383","doi":"https://doi.org/10.1109/jbhi.2025.3571801","pmid":"https://pubmed.ncbi.nlm.nih.gov/40392637"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3571801","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3571801","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026510859","display_name":"Hai Cui","orcid":"https://orcid.org/0000-0001-8207-7690"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai Cui","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0001-8207-7690","affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034008160","display_name":"Meiyu Duan","orcid":"https://orcid.org/0000-0001-7171-2695"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meiyu Duan","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0001-7171-2695","affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101242220","display_name":"Jianyuan Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianyuan Yuan","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109759332","display_name":"Ziwei Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziwei Ma","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046020427","display_name":"Yijia Zhang","orcid":"https://orcid.org/0000-0002-5843-4675"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0002-5843-4675","affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.576,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.66124119,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"29","issue":"10","first_page":"7704","last_page":"7716"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9577999711036682,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7278487086296082},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.52274489402771},{"id":"https://openalex.org/keywords/sign","display_name":"Sign (mathematics)","score":0.4895389974117279},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4466712474822998},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41640377044677734},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.22565016150474548},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13365113735198975}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7278487086296082},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.52274489402771},{"id":"https://openalex.org/C139676723","wikidata":"https://www.wikidata.org/wiki/Q1193832","display_name":"Sign (mathematics)","level":2,"score":0.4895389974117279},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4466712474822998},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41640377044677734},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.22565016150474548},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13365113735198975},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3571801","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3571801","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40392637","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40392637","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G485755790","display_name":"\u9762\u5411\u751f\u7269\u533b\u5b66\u6587\u732e\u7684\u836f\u7269\u91cd\u5b9a\u4f4d\u9690\u542b\u77e5\u8bc6\u53d1\u73b0\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62072070","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6253072627","display_name":null,"funder_award_id":"3132024265","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W2036943279","https://openalex.org/W2053081145","https://openalex.org/W2113072832","https://openalex.org/W2329441002","https://openalex.org/W2346950316","https://openalex.org/W2466168975","https://openalex.org/W2588731179","https://openalex.org/W2803533463","https://openalex.org/W2809156537","https://openalex.org/W2887092413","https://openalex.org/W3012871709","https://openalex.org/W3021498577","https://openalex.org/W3046419426","https://openalex.org/W3194210786","https://openalex.org/W3208007380","https://openalex.org/W3208430676","https://openalex.org/W3212664589","https://openalex.org/W4200140951","https://openalex.org/W4206547282","https://openalex.org/W4252707176","https://openalex.org/W4289656533","https://openalex.org/W4296777868","https://openalex.org/W4311068048","https://openalex.org/W4318624508","https://openalex.org/W4318983406","https://openalex.org/W4323306092","https://openalex.org/W4323644096","https://openalex.org/W4366824201","https://openalex.org/W4367047490","https://openalex.org/W4375952695","https://openalex.org/W4377130907","https://openalex.org/W4378771633","https://openalex.org/W4378952262","https://openalex.org/W4382240086","https://openalex.org/W4383503935","https://openalex.org/W4384652088","https://openalex.org/W4385245566","https://openalex.org/W4385767936","https://openalex.org/W4387191019","https://openalex.org/W4388591490","https://openalex.org/W4388663703","https://openalex.org/W4388878502","https://openalex.org/W4389525220","https://openalex.org/W4389887996","https://openalex.org/W4390331481","https://openalex.org/W4390660447","https://openalex.org/W4390883205","https://openalex.org/W4390970121","https://openalex.org/W4391897268","https://openalex.org/W4392450098","https://openalex.org/W4394973476","https://openalex.org/W4400391364","https://openalex.org/W4400616842","https://openalex.org/W4401070379","https://openalex.org/W4401179776","https://openalex.org/W4401730694","https://openalex.org/W4402827768","https://openalex.org/W4405541844","https://openalex.org/W4405907205"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Drug":[0],"repositioning,":[1],"which":[2,114],"identifies":[3],"new":[4],"therapeutic":[5],"potential":[6],"of":[7,56,193],"approved":[8],"drugs,":[9],"is":[10,161],"pivotal":[11],"in":[12,59],"accelerating":[13],"drug":[14,73,140],"discovery.":[15],"Recently,":[16],"growing":[17],"efforts":[18],"are":[19,37],"devoted":[20],"to":[21,45,77,91,128,150,189],"applying":[22],"graph":[23,108,160],"neural":[24],"networks":[25,125],"(GNNs)":[26],"for":[27,40,97],"effectively":[28],"modeling":[29],"drug-disease":[30],"associations":[31],"(DDAs).":[32],"However,":[33],"current":[34],"GNN-based":[35],"methods":[36],"generally":[38],"designed":[39],"unsigned":[41],"graphs":[42,148,174],"and":[43,87,119,141,144,177],"fail":[44],"gain":[46],"complementary":[47],"insights":[48],"provided":[49],"by":[50],"negative":[51,120,178],"links.":[52],"Despite":[53],"the":[54,80,83,93,117,134,139,154,165,183,191,201,215],"proposal":[55],"sign-aware":[57,107],"GNNs":[58],"general":[60],"fields,":[61],"there":[62],"exist":[63],"two":[64],"intractable":[65],"challenges":[66],"when":[67],"indiscriminately":[68],"deploying":[69],"prior":[70],"solutions":[71],"into":[72,126,175],"repositioning.":[74],"(i)":[75],"How":[76,90],"explicitly":[78],"connect":[79],"nodes":[81],"within":[82],"same":[84,202],"set":[85],"(disease-disease":[86],"drug-drug)?":[88],"(ii)":[89],"design":[92],"contrastive":[94,109,185],"learning":[95,110,186],"objective":[96],"signed":[98,123,146,158,173],"graphs?":[99],"To":[100,132],"this":[101],"end,":[102],"we":[103,137,181],"propose":[104],"a":[105,157],"novel":[106],"approach,":[111],"namely":[112],"SIGDR,":[113],"takes":[115],"both":[116],"positive":[118,176],"links":[121],"from":[122,164,197],"biological":[124],"consideration":[127],"identify":[129],"underlying":[130],"DDAs.":[131],"handle":[133],"first":[135],"challenge,":[136,156],"measure":[138],"disease":[142],"similarity":[143,151],"form":[145],"unipartite":[147],"according":[149],"scores.":[152],"For":[153],"second":[155],"bipartite":[159],"then":[162],"constructed":[163],"annotated":[166],"DDA":[167],"dataset.":[168],"Through":[169],"dividing":[170],"above":[171],"obtained":[172],"subgraphs":[179,199],"respectively,":[180],"devise":[182],"inter-view":[184],"auxiliary":[187],"task":[188],"enhance":[190],"consistency":[192],"node":[194],"representations":[195],"derived":[196],"partitioned":[198],"with":[200],"link":[203],"type.":[204],"Extensive":[205],"experiments":[206],"conducted":[207],"on":[208],"three":[209],"benchmarks":[210],"under":[211],"10-fold":[212],"cross-validation":[213],"demonstrate":[214],"model":[216],"effectiveness.":[217]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
