{"id":"https://openalex.org/W4409581250","doi":"https://doi.org/10.1109/jbhi.2025.3562617","title":"Interval-Shared Information Integration and False-Negative Association Reduction in Multi-Source MiRNA-Disease Association Prediction","display_name":"Interval-Shared Information Integration and False-Negative Association Reduction in Multi-Source MiRNA-Disease Association Prediction","publication_year":2025,"publication_date":"2025-04-18","ids":{"openalex":"https://openalex.org/W4409581250","doi":"https://doi.org/10.1109/jbhi.2025.3562617","pmid":"https://pubmed.ncbi.nlm.nih.gov/40249679"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3562617","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3562617","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Qinghang Cui","orcid":"https://orcid.org/0009-0002-0638-4933"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinghang Cui","raw_affiliation_strings":["School of Information Science and Engineering, Yunnan University, Kunming, China","School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China"],"raw_orcid":"https://orcid.org/0009-0002-0638-4933","affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University, Kunming, China","institution_ids":["https://openalex.org/I189210763"]},{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063112513","display_name":"Honglie Guo","orcid":"https://orcid.org/0000-0002-8132-3295"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Honglie Guo","raw_affiliation_strings":["School of Information Science and Engineering, Yunnan University, Kunming, China","School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China"],"raw_orcid":"https://orcid.org/0000-0002-8132-3295","affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University, Kunming, China","institution_ids":["https://openalex.org/I189210763"]},{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102976275","display_name":"Yueyi Cai","orcid":"https://orcid.org/0009-0004-3713-523X"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueyi Cai","raw_affiliation_strings":["School of Information Science and Engineering, Yunnan University, Kunming, China","School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China"],"raw_orcid":"https://orcid.org/0009-0004-3713-523X","affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University, Kunming, China","institution_ids":["https://openalex.org/I189210763"]},{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yu Fei","orcid":"https://orcid.org/0000-0001-8200-2998"},"institutions":[{"id":"https://openalex.org/I49185572","display_name":"Yunnan University of Finance And Economics","ror":"https://ror.org/04rhev598","country_code":"CN","type":"education","lineage":["https://openalex.org/I49185572"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Fei","raw_affiliation_strings":["School of Statistics and Mathematics, Yunnan University of Finance and Economics, Kunming, China","School of Statistics and Mathematics, Yunnan University of Finance and Economics, Kunming, Yunnan, China"],"raw_orcid":"https://orcid.org/0000-0001-8200-2998","affiliations":[{"raw_affiliation_string":"School of Statistics and Mathematics, Yunnan University of Finance and Economics, Kunming, China","institution_ids":["https://openalex.org/I49185572"]},{"raw_affiliation_string":"School of Statistics and Mathematics, Yunnan University of Finance and Economics, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I49185572"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040105964","display_name":"Shunfang Wang","orcid":"https://orcid.org/0000-0002-1927-8753"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shunfang Wang","raw_affiliation_strings":["School of Information Science and Engineering, Yunnan University, Kunming, China","School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China"],"raw_orcid":"https://orcid.org/0000-0002-1927-8753","affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University, Kunming, China","institution_ids":["https://openalex.org/I189210763"]},{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I189210763"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6846,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.68971681,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"29","issue":"10","first_page":"7717","last_page":"7729"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.977400004863739,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.7187422513961792},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5157942771911621},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4975176155567169},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.4893898367881775},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3318319320678711},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3297466039657593},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.32380908727645874},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1608845591545105},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15622135996818542},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.11315646767616272}],"concepts":[{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.7187422513961792},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5157942771911621},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4975176155567169},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.4893898367881775},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3318319320678711},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3297466039657593},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.32380908727645874},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1608845591545105},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15622135996818542},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.11315646767616272},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3562617","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3562617","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40249679","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40249679","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4313321071","display_name":null,"funder_award_id":"62462068","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G648225990","display_name":null,"funder_award_id":"62062067","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1958284284","https://openalex.org/W1969594222","https://openalex.org/W1992818586","https://openalex.org/W2047967134","https://openalex.org/W2139956879","https://openalex.org/W2164095252","https://openalex.org/W2192997923","https://openalex.org/W2964951118","https://openalex.org/W3000082418","https://openalex.org/W3001440478","https://openalex.org/W3014623641","https://openalex.org/W3033941268","https://openalex.org/W3035524453","https://openalex.org/W3097849656","https://openalex.org/W3157330827","https://openalex.org/W3176561349","https://openalex.org/W4200542843","https://openalex.org/W4220710781","https://openalex.org/W4221166060","https://openalex.org/W4225402571","https://openalex.org/W4225752318","https://openalex.org/W4283653498","https://openalex.org/W4311823641","https://openalex.org/W4317624859","https://openalex.org/W4320857183","https://openalex.org/W4323974793","https://openalex.org/W4327668311","https://openalex.org/W4379197120","https://openalex.org/W4382400397","https://openalex.org/W4383198389","https://openalex.org/W4385157000","https://openalex.org/W4389371580","https://openalex.org/W4391309888","https://openalex.org/W4395030761","https://openalex.org/W4396591803","https://openalex.org/W4396712858","https://openalex.org/W4399134064","https://openalex.org/W4399914365","https://openalex.org/W4400320816","https://openalex.org/W4409771033"],"related_works":["https://openalex.org/W2352440174","https://openalex.org/W4309440960","https://openalex.org/W2062168445","https://openalex.org/W2348940229","https://openalex.org/W2363046693","https://openalex.org/W2389491697","https://openalex.org/W4301044699","https://openalex.org/W2532234348","https://openalex.org/W2067476155","https://openalex.org/W2728345702"],"abstract_inverted_index":{"Numerous":[0],"studies":[1,192],"have":[2,35],"demonstrated":[3],"that":[4,185],"microRNAs":[5],"(miRNAs)":[6],"play":[7],"crucial":[8],"roles":[9],"in":[10,58],"the":[11,19,43,53,59,136,149,153,161],"development":[12],"and":[13,52,84,99,125,152,171,190],"progression":[14],"of":[15,21,46,55,97],"various":[16],"diseases,":[17],"making":[18],"identification":[20],"miRNA-disease":[22],"association":[23,86],"(MDA)":[24],"essential":[25],"for":[26,81],"understanding":[27],"human":[28],"disease":[29],"etiology.":[30],"While":[31],"several":[32],"computational":[33],"models":[34,135],"been":[36],"developed":[37],"to":[38,72,116,138,178],"predict":[39,179],"MDAs,":[40],"challenges":[41],"persist-particularly":[42],"limited":[44],"consideration":[45],"information":[47,123,128,147],"interactions":[48,124],"among":[49],"multi-source":[50,95],"similarities":[51,96],"presence":[54],"\"false-negative\"":[56,155],"associations":[57,156],"original":[60,154],"topology.":[61,143],"To":[62],"address":[63],"these":[64],"issues,":[65],"we":[66],"propose":[67],"ISFNMDA,":[68],"a":[69,104],"model":[70,162],"designed":[71],"infer":[73],"potential":[74,180],"MDAs":[75],"by":[76],"leveraging":[77],"multi-view":[78],"collaborative":[79],"learning":[80],"feature":[82,106],"extraction":[83],"optimizing":[85],"topology":[87,151],"through":[88,157],"graph":[89,133,142,173],"structure":[90,174],"momentum":[91,158],"contrastive":[92,159],"learning.":[93],"Specifically,":[94],"miRNAs":[98],"diseases":[100],"are":[101,175],"mapped":[102],"into":[103],"unified":[105],"space":[107],"via":[108],"encoders.":[109],"The":[110,167],"Pearson":[111],"correlation":[112],"coefficient":[113],"is":[114],"employed":[115],"derive":[117],"pairwise":[118],"constraints":[119],"between":[120,148],"nodes,":[121],"facilitating":[122],"constructing":[126],"interval-shared":[127],"constraints.":[129],"Subsequently,":[130],"an":[131,140],"inference":[132],"learner":[134],"representations":[137,170],"generate":[139],"inferred":[141,150],"By":[144],"maximizing":[145],"mutual":[146],"learning,":[160],"effectively":[163],"reduces":[164],"spurious":[165],"correlations.":[166],"final":[168],"comprehensive":[169],"optimized":[172],"then":[176],"used":[177],"MDAs.":[181],"Experimental":[182],"results":[183],"demonstrate":[184],"ISFNMDA":[186],"outperforms":[187],"existing":[188],"methods,":[189],"case":[191],"further":[193],"validate":[194],"its":[195],"predictive":[196],"capability.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
