{"id":"https://openalex.org/W4409536923","doi":"https://doi.org/10.1109/jbhi.2025.3561846","title":"PKAN: Leveraging Kolmogorov\u2013Arnold Networks and Multi-Modal Learning for Peptide Prediction With Advanced Language Models","display_name":"PKAN: Leveraging Kolmogorov\u2013Arnold Networks and Multi-Modal Learning for Peptide Prediction With Advanced Language Models","publication_year":2025,"publication_date":"2025-04-17","ids":{"openalex":"https://openalex.org/W4409536923","doi":"https://doi.org/10.1109/jbhi.2025.3561846","pmid":"https://pubmed.ncbi.nlm.nih.gov/40244834"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3561846","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3561846","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065104804","display_name":"Li Wang","orcid":"https://orcid.org/0009-0000-3257-4170"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Li Wang","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044283271","display_name":"Xiangzheng Fu","orcid":"https://orcid.org/0000-0001-6840-2573"},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xiangzheng Fu","raw_affiliation_strings":["School of Chinese Medicine, Hong Kong Baptist University, Hong Kong, SAR, China","School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"School of Chinese Medicine, Hong Kong Baptist University, Hong Kong, SAR, China","institution_ids":["https://openalex.org/I141568987"]},{"raw_affiliation_string":"School of Chinese Medicine, Hong Kong Baptist University, Hong Kong SAR, China","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063256241","display_name":"Xiucai Ye","orcid":"https://orcid.org/0000-0002-5547-3919"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Xiucai Ye","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038336830","display_name":"Tetsuya Sakurai","orcid":"https://orcid.org/0000-0002-5789-7547"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuya Sakurai","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027286013","display_name":"Xiangxiang Zeng","orcid":"https://orcid.org/0000-0001-6201-0114"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangxiang Zeng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100726685","display_name":"Yiping Liu","orcid":"https://orcid.org/0000-0001-7340-2551"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiping Liu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5065104804"],"corresponding_institution_ids":["https://openalex.org/I146399215"],"apc_list":null,"apc_paid":null,"fwci":4.2824,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.9404976,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"29","issue":"10","first_page":"7000","last_page":"7009"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9778000116348267,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7138106822967529},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.5168424248695374},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5048895478248596},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.42701610922813416},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3905922770500183},{"id":"https://openalex.org/keywords/speech-recognition","display_name":"Speech recognition","score":0.3778466284275055},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36656713485717773}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7138106822967529},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.5168424248695374},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5048895478248596},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.42701610922813416},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3905922770500183},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.3778466284275055},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36656713485717773},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3561846","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3561846","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40244834","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40244834","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5099999904632568,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1437335841","https://openalex.org/W1527888204","https://openalex.org/W1982411844","https://openalex.org/W1985718285","https://openalex.org/W2040870580","https://openalex.org/W2344689512","https://openalex.org/W2608035254","https://openalex.org/W2739999456","https://openalex.org/W2770538422","https://openalex.org/W2884031225","https://openalex.org/W3025501158","https://openalex.org/W3095560944","https://openalex.org/W3111392271","https://openalex.org/W3113803919","https://openalex.org/W3139737861","https://openalex.org/W3143973553","https://openalex.org/W3167388300","https://openalex.org/W3198254086","https://openalex.org/W3199607358","https://openalex.org/W3214197685","https://openalex.org/W4293237983","https://openalex.org/W4308370073","https://openalex.org/W4310712976","https://openalex.org/W4312113926","https://openalex.org/W4320495200","https://openalex.org/W4322580799","https://openalex.org/W4382501959","https://openalex.org/W4386246446","https://openalex.org/W4387272159","https://openalex.org/W4387882024","https://openalex.org/W4388621595","https://openalex.org/W4391113029","https://openalex.org/W4391850848","https://openalex.org/W4392162030","https://openalex.org/W4392571650","https://openalex.org/W4397001187","https://openalex.org/W4400000389","https://openalex.org/W4400046618","https://openalex.org/W4400831251","https://openalex.org/W4402187091","https://openalex.org/W4403763106"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W2731899572","https://openalex.org/W4230611425","https://openalex.org/W4294635752","https://openalex.org/W4304166257","https://openalex.org/W4383066092","https://openalex.org/W3215138031","https://openalex.org/W2379392295","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Peptides":[0],"can":[1,27],"offer":[2],"highly":[3],"specific":[4,132],"biological":[5],"activities,":[6],"serving":[7],"as":[8,31,37],"essential":[9],"mediators":[10],"of":[11,42,61,120,131,141,151,164,171],"intercellular":[12],"signaling,":[13],"which":[14],"are":[15],"critical":[16],"for":[17,81,159],"advancing":[18],"precision":[19,140],"medicine":[20],"and":[21,44,84,115,139,147,167],"drug":[22],"development.":[23],"Their":[24],"primary":[25],"structure":[26],"be":[28],"depicted":[29],"either":[30],"an":[32],"amino":[33],"acid":[34],"sequence":[35],"or":[36],"a":[38,71,99],"chemical":[39,45],"molecules":[40],"consisting":[41],"atoms":[43],"bonds.":[46],"Large":[47],"language":[48,79,173],"models":[49,80,96],"(LLMs)":[50],"hold":[51],"the":[52,57,66,116,124,137,142,161,169],"potential":[53],"to":[54],"thoroughly":[55],"elucidate":[56],"intricate":[58,128],"intrinsic":[59],"properties":[60],"peptides.":[62],"Here":[63],"we":[64],"present":[65],"Peptide":[67],"Kolmogorov-Arnold":[68],"Network":[69],"(PKAN),":[70],"framework":[72,144],"leveraging":[73],"multi-modal":[74,107],"representations":[75],"inspired":[76],"by":[77],"advanced":[78],"peptide":[82,152,165,172],"activity":[83],"functionality":[85],"prediction.":[86],"Comparative":[87],"experiments":[88],"across":[89],"tasks":[90],"show":[91],"that":[92],"PKAN":[93,143],"outperforms":[94],"state-of-the-art":[95],"while":[97],"maintaining":[98],"streamlined":[100],"design":[101],"with":[102,127],"superior":[103],"predictive":[104],"capabilities.":[105],"The":[106],"feature":[108],"importance":[109],"scoring,":[110],"anchored":[111],"in":[112,145,175],"global":[113],"structures":[114],"significant":[117],"marginal":[118],"impacts":[119],"derived":[121],"features":[122],"on":[123],"model,":[125],"coupled":[126],"symbolic":[129],"regression":[130],"activation":[133],"functions,":[134],"further":[135],"demonstrates":[136],"robustness":[138],"identifying":[146],"elucidating":[148],"key":[149],"determinants":[150],"functionality.":[153],"This":[154],"work":[155],"provides":[156],"scientific":[157],"evidence":[158],"investigating":[160],"complex":[162],"mechanisms":[163],"materials":[166],"supports":[168],"progression":[170],"paradigms":[174],"biology.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
