{"id":"https://openalex.org/W4409325823","doi":"https://doi.org/10.1109/jbhi.2025.3559570","title":"Multi-View Contrastive Learning for Drug Repositioning on Heterogeneous Biological Networks","display_name":"Multi-View Contrastive Learning for Drug Repositioning on Heterogeneous Biological Networks","publication_year":2025,"publication_date":"2025-04-10","ids":{"openalex":"https://openalex.org/W4409325823","doi":"https://doi.org/10.1109/jbhi.2025.3559570","pmid":"https://pubmed.ncbi.nlm.nih.gov/40208759"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3559570","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3559570","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026510859","display_name":"Hai Cui","orcid":"https://orcid.org/0000-0001-8207-7690"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai Cui","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, China","Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0001-8207-7690","affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077313299","display_name":"Haijia Bi","orcid":"https://orcid.org/0009-0008-6681-4521"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210134929","display_name":"Jilin Province Science and Technology Department","ror":"https://ror.org/049x38272","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210134929"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haijia Bi","raw_affiliation_strings":["College of Computer Science and Technology, Jilin University, Changchun, China","College of Computer Science and Technology, Jilin University, Changchun, Jilin, China"],"raw_orcid":"https://orcid.org/0009-0008-6681-4521","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Jilin University, Changchun, China","institution_ids":["https://openalex.org/I4210134929","https://openalex.org/I194450716"]},{"raw_affiliation_string":"College of Computer Science and Technology, Jilin University, Changchun, Jilin, China","institution_ids":["https://openalex.org/I4210134929","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034008160","display_name":"Meiyu Duan","orcid":"https://orcid.org/0000-0001-7171-2695"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meiyu Duan","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, China","Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0001-7171-2695","affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Shilong Wang","orcid":"https://orcid.org/0009-0000-1466-7314"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shilong Wang","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, China","Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0009-0000-1466-7314","affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101017497","display_name":"Yanchen Qu","orcid":null},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanchen Qu","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, China","Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0009-0008-6382-7327","affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046020427","display_name":"Yijia Zhang","orcid":"https://orcid.org/0000-0002-5843-4675"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, China","Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0002-5843-4675","affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I43313876"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.4558,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.92254025,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"29","issue":"9","first_page":"6902","last_page":"6914"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8960999846458435,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8960999846458435,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8949999809265137,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.8672999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7138063907623291},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.5497572422027588},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5065926313400269},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.37005841732025146},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3383922278881073},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.2774743437767029},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16371268033981323}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7138063907623291},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.5497572422027588},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5065926313400269},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.37005841732025146},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3383922278881073},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.2774743437767029},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16371268033981323},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3559570","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3559570","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40208759","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40208759","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G485755790","display_name":"\u9762\u5411\u751f\u7269\u533b\u5b66\u6587\u732e\u7684\u836f\u7269\u91cd\u5b9a\u4f4d\u9690\u542b\u77e5\u8bc6\u53d1\u73b0\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62072070","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6253072627","display_name":null,"funder_award_id":"3132024265","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1979987282","https://openalex.org/W2007037518","https://openalex.org/W2017232992","https://openalex.org/W2060515314","https://openalex.org/W2065644012","https://openalex.org/W2095975861","https://openalex.org/W2113072832","https://openalex.org/W2346950316","https://openalex.org/W2521629887","https://openalex.org/W2735294960","https://openalex.org/W2809156537","https://openalex.org/W2884441791","https://openalex.org/W3010110722","https://openalex.org/W3012871709","https://openalex.org/W3164945274","https://openalex.org/W3192134500","https://openalex.org/W3198879735","https://openalex.org/W3212664589","https://openalex.org/W4200140951","https://openalex.org/W4205883408","https://openalex.org/W4206547282","https://openalex.org/W4210568562","https://openalex.org/W4281634148","https://openalex.org/W4289656533","https://openalex.org/W4296639080","https://openalex.org/W4296777868","https://openalex.org/W4311068048","https://openalex.org/W4323644096","https://openalex.org/W4366824201","https://openalex.org/W4375955768","https://openalex.org/W4378952262","https://openalex.org/W4382240023","https://openalex.org/W4383503935","https://openalex.org/W4385767936","https://openalex.org/W4386980918","https://openalex.org/W4388283707","https://openalex.org/W4388663703","https://openalex.org/W4388878502","https://openalex.org/W4389131658","https://openalex.org/W4389525220","https://openalex.org/W4389887996","https://openalex.org/W4390331481","https://openalex.org/W4390660447","https://openalex.org/W4390883205","https://openalex.org/W4391618879","https://openalex.org/W4392450098","https://openalex.org/W4399716545","https://openalex.org/W4400391364","https://openalex.org/W4401332220","https://openalex.org/W4402475181","https://openalex.org/W4404035653","https://openalex.org/W4405541844","https://openalex.org/W4406983090"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Drug":[0],"repositioning,":[1],"which":[2,70],"identifies":[3],"new":[4],"therapeutic":[5],"potential":[6],"of":[7,21,44],"approved":[8],"drugs,":[9],"is":[10,80,84,141,181],"instrumental":[11],"in":[12,127,150],"accelerating":[13],"drug":[14],"discovery.":[15],"Recently,":[16],"to":[17,86,143],"alleviate":[18],"the":[19,66,114,123,145,151,155,160,169,173,183,186,208],"effect":[20],"data":[22],"sparsity":[23],"on":[24,93,195,201],"predicting":[25],"possible":[26],"drug-disease":[27],"associations":[28],"(DDAs),":[29],"graph":[30,138],"contrastive":[31,88,104,165],"learning":[32,41,105,166],"(GCL)":[33],"has":[34],"emerged":[35],"as":[36],"a":[37,101,131],"promising":[38],"paradigm":[39],"for":[40,58,72,107],"discriminative":[42],"representations":[43],"drugs":[45],"and":[46,163,191],"diseases":[47],"through":[48],"distilling":[49],"informative":[50],"self-supervised":[51],"signals.":[52],"However,":[53],"existing":[54],"GCL-based":[55],"methods":[56],"devised":[57],"DDA":[59,108,125],"prediction":[60],"still":[61],"encounter":[62],"two":[63],"limitations.":[64],"Firstly,":[65],"crucial":[67],"heterogeneous":[68,132,137],"property,":[69],"allows":[71],"capturing":[73],"nuanced":[74],"interaction":[75],"semantics":[76],"between":[77,176,188],"biological":[78,133],"entities,":[79],"overlooked.":[81],"The":[82],"second":[83,156],"how":[85],"perform":[87],"view":[89],"augmentation":[90],"without":[91],"relying":[92],"stochastic":[94],"perturbation.":[95],"In":[96],"this":[97],"study,":[98],"we":[99,158],"propose":[100],"novel":[102],"multi-view":[103],"approach":[106],"prediction,":[109],"namely":[110],"MICLE.":[111],"To":[112],"handle":[113],"first":[115],"issue,":[116],"protein-related":[117],"bipartite":[118],"graphs":[119],"are":[120],"integrated":[121],"with":[122],"original":[124],"network":[126,134,140],"advance,":[128],"thereby":[129],"composing":[130],"(HBN).":[135],"Besides,":[136],"neural":[139],"applied":[142],"mine":[144],"rich":[146],"connectivity":[147],"patterns":[148],"implicit":[149],"above":[152],"HBN.":[153],"For":[154],"limitation,":[157],"design":[159],"complementary":[161],"inter-view":[162],"intra-view":[164],"tasks.":[167],"Specifically,":[168],"former":[170],"ensures":[171],"that":[172],"mutual":[174],"information":[175],"paired":[177],"nodes":[178],"across":[179],"views":[180],"maximized,":[182],"latter":[184],"enhances":[185],"agreement":[187],"each":[189],"node":[190],"its":[192],"first-order":[193],"neighbors":[194],"similarity":[196],"networks.":[197],"Extensive":[198],"experiments":[199],"conducted":[200],"three":[202],"benchmarks":[203],"under":[204],"10-fold":[205],"cross-validation":[206],"demonstrate":[207],"model":[209],"effectiveness.":[210]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
