{"id":"https://openalex.org/W4408323897","doi":"https://doi.org/10.1109/jbhi.2025.3550019","title":"MMDDI-SSE: A Novel Multi-Modal Feature Fusion Model With Static Subgraph Embedding for Drug-Drug Interaction Event Prediction","display_name":"MMDDI-SSE: A Novel Multi-Modal Feature Fusion Model With Static Subgraph Embedding for Drug-Drug Interaction Event Prediction","publication_year":2025,"publication_date":"2025-03-11","ids":{"openalex":"https://openalex.org/W4408323897","doi":"https://doi.org/10.1109/jbhi.2025.3550019","pmid":"https://pubmed.ncbi.nlm.nih.gov/40067720"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3550019","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3550019","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089534072","display_name":"Guishen Wang","orcid":"https://orcid.org/0000-0001-6039-9285"},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":null,"type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guishen Wang","raw_affiliation_strings":["College of Computer Science and Engineering, Changchun University of Technology, Jilin, China"],"raw_orcid":"https://orcid.org/0000-0001-6039-9285","affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Jilin, China","institution_ids":["https://openalex.org/I4385474403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102863711","display_name":"Honghan Chen","orcid":"https://orcid.org/0000-0002-3053-4180"},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":null,"type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Honghan Chen","raw_affiliation_strings":["College of Computer Science and Engineering, Changchun University of Technology, Jilin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Jilin, China","institution_ids":["https://openalex.org/I4385474403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089743156","display_name":"Handan Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":null,"type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Handan Wang","raw_affiliation_strings":["College of Computer Science and Engineering, Changchun University of Technology, Jilin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Jilin, China","institution_ids":["https://openalex.org/I4385474403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026610784","display_name":"Hairong Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":null,"type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hairong Gao","raw_affiliation_strings":["College of Computer Science and Engineering, Changchun University of Technology, Jilin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Jilin, China","institution_ids":["https://openalex.org/I4385474403"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xiaowen Hu","orcid":"https://orcid.org/0009-0002-9176-7268"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaowen Hu","raw_affiliation_strings":["School of Biomedical Engineering and Informatics, Nanjing Medical University, Jiangsu, China","School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0002-9176-7268","affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering and Informatics, Nanjing Medical University, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]},{"raw_affiliation_string":"School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100611825","display_name":"Chen Cao","orcid":"https://orcid.org/0000-0001-5343-808X"},"institutions":[{"id":"https://openalex.org/I4210112069","display_name":"Theranostics (New Zealand)","ror":"https://ror.org/02wykja76","country_code":"NZ","type":"company","lineage":["https://openalex.org/I4210112069"]},{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN","NZ"],"is_corresponding":false,"raw_author_name":"Chen Cao","raw_affiliation_strings":["Key Laboratory for Bio-Electromagnetic Environment and Advanced Medical Theranostics, the School of Biomedical Engineering and Informatics+, Nanjing Medical University, Jiangsu, China","Key Laboratory for Bio-Electromagnetic Environment and Advanced Medical Theranostics, the School of Biomedical Engineering and Informatics, Nanjing Medical University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0000-0001-5343-808X","affiliations":[{"raw_affiliation_string":"Key Laboratory for Bio-Electromagnetic Environment and Advanced Medical Theranostics, the School of Biomedical Engineering and Informatics+, Nanjing Medical University, Jiangsu, China","institution_ids":["https://openalex.org/I4210112069"]},{"raw_affiliation_string":"Key Laboratory for Bio-Electromagnetic Environment and Advanced Medical Theranostics, the School of Biomedical Engineering and Informatics, Nanjing Medical University, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5089534072"],"corresponding_institution_ids":["https://openalex.org/I4385474403"],"apc_list":null,"apc_paid":null,"fwci":11.9313,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.98564691,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"29","issue":"8","first_page":"6081","last_page":"6091"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6778820753097534},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6481503844261169},{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.6142482757568359},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.6128406524658203},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5829232931137085},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.48441535234451294},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4574202597141266},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.428072065114975},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3800297975540161},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3683284819126129},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34925657510757446},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18931931257247925},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10205808281898499},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.10109531879425049}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6778820753097534},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6481503844261169},{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.6142482757568359},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.6128406524658203},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5829232931137085},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.48441535234451294},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4574202597141266},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.428072065114975},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3800297975540161},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3683284819126129},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34925657510757446},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18931931257247925},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10205808281898499},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.10109531879425049},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3550019","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3550019","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40067720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40067720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1056020920","display_name":null,"funder_award_id":"YDZJ202201ZYTS424","funder_id":"https://openalex.org/F4320310121","funder_display_name":"Natural Science Foundation of Jilin Province"},{"id":"https://openalex.org/G5798893398","display_name":null,"funder_award_id":"62231013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7512682915","display_name":null,"funder_award_id":"62102068","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320310121","display_name":"Natural Science Foundation of Jilin Province","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W3024894285","https://openalex.org/W3044296243","https://openalex.org/W3126523467","https://openalex.org/W3134238388","https://openalex.org/W3137382409","https://openalex.org/W3139253280","https://openalex.org/W3157889929","https://openalex.org/W3188887004","https://openalex.org/W3205082786","https://openalex.org/W3208102118","https://openalex.org/W4212966936","https://openalex.org/W4245246830","https://openalex.org/W4281850946","https://openalex.org/W4287385009","https://openalex.org/W4294884620","https://openalex.org/W4307717106","https://openalex.org/W4309400060","https://openalex.org/W4311247426","https://openalex.org/W4313405519","https://openalex.org/W4318150241","https://openalex.org/W4322745247","https://openalex.org/W4366091323","https://openalex.org/W4385288794","https://openalex.org/W4386634482","https://openalex.org/W4386946909","https://openalex.org/W4387745620","https://openalex.org/W4388006581","https://openalex.org/W4388423863","https://openalex.org/W4388615774","https://openalex.org/W4390331481","https://openalex.org/W4390578025","https://openalex.org/W4391140809","https://openalex.org/W4391614544","https://openalex.org/W4393255451","https://openalex.org/W4400142953","https://openalex.org/W4400391364","https://openalex.org/W4403369693","https://openalex.org/W4406261554"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2037549926","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W2419146053","https://openalex.org/W4388890789","https://openalex.org/W2088247287","https://openalex.org/W2963903416"],"abstract_inverted_index":{"Artificial":[0],"intelligence":[1],"techniques":[2],"play":[3],"a":[4,62,84,99],"pivotal":[5],"role":[6],"in":[7,47,158],"the":[8,152],"accurate":[9],"identification":[10],"of":[11,154],"drug-drug":[12],"interaction":[13],"(DDI)":[14],"events,":[15],"thereby":[16],"informing":[17],"clinical":[18],"decisions":[19],"and":[20,41,49,107,129],"treatment":[21],"regimens.":[22],"While":[23],"existing":[24],"DDI":[25,69,80,160],"prediction":[26,161],"models":[27],"have":[28],"made":[29],"significant":[30],"progress":[31],"by":[32],"leveraging":[33],"sequence":[34,77],"features":[35,110],"such":[36],"as":[37],"chemical":[38,125],"substructures,":[39,126],"targets,":[40],"enzymes,":[42],"they":[43],"often":[44],"face":[45],"limitations":[46],"integrating":[48],"effectively":[50],"utilizing":[51],"multi-modal":[52,64],"drug":[53,76],"representations.":[54],"To":[55],"address":[56],"these":[57,112],"limitations,":[58],"this":[59],"study":[60],"proposes":[61],"novel":[63,85],"feature":[65],"fusion":[66],"model":[67,97],"for":[68],"event":[70],"prediction:":[71],"MMDDI-SSE.":[72],"Our":[73],"approach":[74],"integrates":[75],"modality":[78],"with":[79],"graph":[81,100],"representations":[82],"through":[83],"architecture":[86,102],"that":[87],"employs":[88],"static":[89],"subgraph":[90],"generation":[91],"to":[92,103,145],"capture":[93],"structural":[94],"properties.":[95],"The":[96],"utilizes":[98],"autoencoder":[101],"learn":[104],"both":[105],"local":[106],"global":[108],"topological":[109],"from":[111],"subgraphs,":[113],"while":[114],"simultaneously":[115],"processing":[116],"diverse":[117],"sequence-based":[118],"characteristics":[119],"including":[120],"semantically":[121],"enhanced":[122],"pharmacodynamic":[123],"features,":[124],"target":[127],"proteins,":[128],"enzyme":[130],"information.":[131],"Through":[132],"comprehensive":[133],"evaluation":[134],"on":[135],"two":[136],"distinct":[137],"datasets,":[138],"MMDDI-SSE":[139],"demonstrates":[140],"superior":[141],"predictive":[142],"performance":[143],"compared":[144],"state-of-the-art":[146],"baselines.":[147],"Ablation":[148],"studies":[149],"further":[150],"validate":[151],"effectiveness":[153],"each":[155],"architectural":[156],"component":[157],"enhancing":[159],"accuracy.":[162]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
