{"id":"https://openalex.org/W4408609571","doi":"https://doi.org/10.1109/jbhi.2025.3547444","title":"Infusing Multi-Hop Medical Knowledge Into Smaller Language Models for Biomedical Question Answering","display_name":"Infusing Multi-Hop Medical Knowledge Into Smaller Language Models for Biomedical Question Answering","publication_year":2025,"publication_date":"2025-03-19","ids":{"openalex":"https://openalex.org/W4408609571","doi":"https://doi.org/10.1109/jbhi.2025.3547444","pmid":"https://pubmed.ncbi.nlm.nih.gov/40106238"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2025.3547444","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3547444","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102758261","display_name":"Jing Chen","orcid":"https://orcid.org/0000-0003-0410-415X"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jing Chen","raw_affiliation_strings":["Department of Computer Science and Technology, Tongji University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0003-0410-415X","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004301353","display_name":"Zhihua Wei","orcid":"https://orcid.org/0000-0002-5937-3907"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihua Wei","raw_affiliation_strings":["Department of Computer Science and Technology, Tongji University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0002-5937-3907","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103119945","display_name":"Wen Shen","orcid":"https://orcid.org/0000-0002-4210-5447"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen Shen","raw_affiliation_strings":["Department of Computer Science and Technology, Tongji University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0002-4210-5447","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":null,"display_name":"Rui Shang","orcid":"https://orcid.org/0009-0006-2492-6555"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Shang","raw_affiliation_strings":["Department of Computer Science and Technology, Tongji University, Shanghai, China"],"raw_orcid":"https://orcid.org/0009-0006-2492-6555","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102758261"],"corresponding_institution_ids":["https://openalex.org/I116953780"],"apc_list":null,"apc_paid":null,"fwci":8.693,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.9706876,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"29","issue":"7","first_page":"5317","last_page":"5328"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7134848237037659},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.68326735496521},{"id":"https://openalex.org/keywords/hop","display_name":"Hop (telecommunications)","score":0.4989817142486572},{"id":"https://openalex.org/keywords/medical-knowledge","display_name":"Medical knowledge","score":0.478963166475296},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4575755298137665},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3924621343612671},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37264877557754517},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3501529097557068},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.17227530479431152},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13701292872428894},{"id":"https://openalex.org/keywords/medical-education","display_name":"Medical education","score":0.11335250735282898}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7134848237037659},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.68326735496521},{"id":"https://openalex.org/C25906391","wikidata":"https://www.wikidata.org/wiki/Q1432381","display_name":"Hop (telecommunications)","level":2,"score":0.4989817142486572},{"id":"https://openalex.org/C2985722590","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medical knowledge","level":2,"score":0.478963166475296},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4575755298137665},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3924621343612671},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37264877557754517},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3501529097557068},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.17227530479431152},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13701292872428894},{"id":"https://openalex.org/C509550671","wikidata":"https://www.wikidata.org/wiki/Q126945","display_name":"Medical education","level":1,"score":0.11335250735282898}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2025.3547444","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2025.3547444","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:40106238","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40106238","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5899999737739563,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G4799762357","display_name":null,"funder_award_id":"62206170","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7787779013","display_name":null,"funder_award_id":"62376199","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1981208470","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2953163841","https://openalex.org/W2953356739","https://openalex.org/W2970482702","https://openalex.org/W2970986790","https://openalex.org/W2971007555","https://openalex.org/W3046375318","https://openalex.org/W3114916066","https://openalex.org/W3118485687","https://openalex.org/W3162922479","https://openalex.org/W3172335055","https://openalex.org/W3211384762","https://openalex.org/W4206778668","https://openalex.org/W4221153690","https://openalex.org/W4372342402","https://openalex.org/W4384071683","https://openalex.org/W4385479968","https://openalex.org/W4385567216","https://openalex.org/W4385573007","https://openalex.org/W4392359953","https://openalex.org/W4394782456","https://openalex.org/W4396762144","https://openalex.org/W4406152279","https://openalex.org/W6759579507","https://openalex.org/W6761910064","https://openalex.org/W6798182279","https://openalex.org/W6803958908","https://openalex.org/W6809646742","https://openalex.org/W6810108873","https://openalex.org/W6838461927","https://openalex.org/W6845952779","https://openalex.org/W6850625674"],"related_works":["https://openalex.org/W2384605597","https://openalex.org/W2387743295","https://openalex.org/W2117210722","https://openalex.org/W2589759689","https://openalex.org/W3082787378","https://openalex.org/W2136007095","https://openalex.org/W2366230879","https://openalex.org/W3208425359","https://openalex.org/W4405141166","https://openalex.org/W2349927912"],"abstract_inverted_index":{"MedQA-USMLE":[0,80,182],"is":[1],"a":[2,63,119,137,184],"challenging":[3],"biomedical":[4],"question":[5,139],"answering":[6,140],"(BQA)":[7],"task,":[8,19],"as":[9,42],"its":[10],"questions":[11,81,94],"typically":[12],"involve":[13],"multi-hop":[14,64,111],"reasoning.":[15,176],"To":[16,57,104],"solve":[17],"this":[18,47,59],"BQA":[20,159],"systems":[21],"should":[22],"possess":[23],"not":[24],"only":[25],"extensive":[26],"medical":[27,33,65,74,175],"professional":[28],"knowledge":[29,66,112],"but":[30],"also":[31],"strong":[32],"reasoning":[34,75,84,120],"capabilities.":[35,76],"While":[36],"state-of-the-art":[37],"larger":[38],"language":[39,50,123],"models,":[40],"such":[41],"Med-PaLM":[43],"2,":[44],"have":[45],"overcome":[46],"challenge,":[48],"smaller":[49],"models":[51],"(SLMs)":[52],"still":[53],"struggle":[54],"with":[55,73],"it.":[56],"bridge":[58],"gap,":[60],"we":[61,78,117,131],"introduces":[62],"infusion":[67],"(MHMKI)":[68],"procedure":[69],"to":[70,107,125],"endow":[71],"SLMs":[72,106,153],"Specifically,":[77],"categorize":[79],"into":[82,136],"distinct":[83],"types,":[85],"then":[86],"tailor":[87],"pre-training":[88,134],"instances":[89,135],"for":[90,142],"each":[91],"type":[92],"of":[93,101,145,181,187],"using":[95],"the":[96,110,133,179],"semi-structured":[97],"information":[98],"and":[99],"hyperlinks":[100],"Wikipedia":[102],"articles.":[103],"enable":[105],"efficiently":[108],"capture":[109],"contained":[113],"in":[114],"these":[115],"instances,":[116],"design":[118],"chain":[121],"masked":[122],"model":[124],"further":[126],"pre-train":[127],"BERT":[128],"models.":[129,147],"Moreover,":[130],"convert":[132],"composite":[138],"dataset":[141],"intermediate":[143],"fine-tuning":[144],"GPT":[146],"We":[148],"evaluate":[149],"MHMKI":[150,165],"on":[151,171,189],"six":[152],"across":[154],"five":[155],"datasets":[156],"spanning":[157],"three":[158],"tasks.":[160],"The":[161],"results":[162],"demonstrate":[163],"that":[164],"consistently":[166],"improves":[167],"SLMs'":[168],"performance,":[169],"particularly":[170],"tasks":[172],"requiring":[173],"substantial":[174],"For":[177],"instance,":[178],"accuracy":[180],"shows":[183],"significant":[185],"increase":[186],"5.3%":[188],"average.":[190]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
