{"id":"https://openalex.org/W4403826877","doi":"https://doi.org/10.1109/jbhi.2024.3487174","title":"scSwinTNet: A Cell Type Annotation Method for Large-Scale Single-Cell RNA-Seq Data Based on Shifted Window Attention","display_name":"scSwinTNet: A Cell Type Annotation Method for Large-Scale Single-Cell RNA-Seq Data Based on Shifted Window Attention","publication_year":2024,"publication_date":"2024-10-28","ids":{"openalex":"https://openalex.org/W4403826877","doi":"https://doi.org/10.1109/jbhi.2024.3487174","pmid":"https://pubmed.ncbi.nlm.nih.gov/39466872"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2024.3487174","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3487174","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019435645","display_name":"Huanhuan Dai","orcid":"https://orcid.org/0000-0002-6331-8038"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huanhuan Dai","raw_affiliation_strings":["School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China"],"raw_orcid":"https://orcid.org/0000-0002-6331-8038","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061578352","display_name":"Xiangyu Meng","orcid":"https://orcid.org/0000-0001-5696-3090"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangyu Meng","raw_affiliation_strings":["School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China"],"raw_orcid":"https://orcid.org/0000-0001-5696-3090","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhiyi Pan","orcid":"https://orcid.org/0009-0008-2050-3947"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyi Pan","raw_affiliation_strings":["School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China"],"raw_orcid":"https://orcid.org/0009-0008-2050-3947","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100650559","display_name":"Qing Yang","orcid":"https://orcid.org/0009-0009-4285-7735"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Yang","raw_affiliation_strings":["School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China"],"raw_orcid":"https://orcid.org/0009-0009-4285-7735","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112863401","display_name":"Haonan Song","orcid":"https://orcid.org/0009-0003-2183-2586"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haonan Song","raw_affiliation_strings":["School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yuan Gao","orcid":"https://orcid.org/0009-0004-7295-9613"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Gao","raw_affiliation_strings":["School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China"],"raw_orcid":"https://orcid.org/0009-0004-7295-9613","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100333854","display_name":"Xun Wang","orcid":"https://orcid.org/0000-0002-2741-433X"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xun Wang","raw_affiliation_strings":["School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China"],"raw_orcid":"https://orcid.org/0000-0002-2741-433X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Petroleum (East China), Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5019435645"],"corresponding_institution_ids":["https://openalex.org/I4210162190"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.16755082,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"29","issue":"4","first_page":"3035","last_page":"3044"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9208999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6961408853530884},{"id":"https://openalex.org/keywords/window","display_name":"Window (computing)","score":0.6274593472480774},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5903608798980713},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4768139719963074},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.42781898379325867},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3643195927143097},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36371687054634094},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3409940004348755},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1656685471534729},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.1455739140510559},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13805806636810303},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11036118865013123},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09500053524971008},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09433439373970032}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6961408853530884},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.6274593472480774},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5903608798980713},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4768139719963074},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.42781898379325867},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3643195927143097},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36371687054634094},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3409940004348755},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1656685471534729},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.1455739140510559},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13805806636810303},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11036118865013123},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09500053524971008},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09433439373970032},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2024.3487174","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3487174","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:39466872","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39466872","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2787410821","display_name":null,"funder_award_id":"21CX06018A","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G307768753","display_name":null,"funder_award_id":"62272479","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6059194225","display_name":null,"funder_award_id":"61972416","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6093738109","display_name":null,"funder_award_id":"62202498","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6683504761","display_name":null,"funder_award_id":"ZR2021QF023","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G7422609337","display_name":null,"funder_award_id":"ZR2022LZH009","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W2069089843","https://openalex.org/W2112796928","https://openalex.org/W2338756998","https://openalex.org/W2598326928","https://openalex.org/W2735067671","https://openalex.org/W2753908609","https://openalex.org/W2796170779","https://openalex.org/W2907514116","https://openalex.org/W2907783748","https://openalex.org/W2937917790","https://openalex.org/W2949237386","https://openalex.org/W2949829455","https://openalex.org/W2950129791","https://openalex.org/W2951914955","https://openalex.org/W2959295202","https://openalex.org/W2964643116","https://openalex.org/W2970633838","https://openalex.org/W2971398276","https://openalex.org/W2971653850","https://openalex.org/W2973034691","https://openalex.org/W2980495984","https://openalex.org/W2995268793","https://openalex.org/W2995410603","https://openalex.org/W2998065416","https://openalex.org/W3005127469","https://openalex.org/W3006566541","https://openalex.org/W3107142041","https://openalex.org/W3129725981","https://openalex.org/W3130814454","https://openalex.org/W3138479716","https://openalex.org/W3196630240","https://openalex.org/W3198628780","https://openalex.org/W3208953781","https://openalex.org/W3215470628","https://openalex.org/W4210442050","https://openalex.org/W4212836561","https://openalex.org/W4213270761","https://openalex.org/W4221065117","https://openalex.org/W4286210821","https://openalex.org/W4288384137","https://openalex.org/W4297243391","https://openalex.org/W4311232381","https://openalex.org/W4313561039","https://openalex.org/W4361284397","https://openalex.org/W4367548806","https://openalex.org/W4378716051","https://openalex.org/W4383058491","https://openalex.org/W4385245566","https://openalex.org/W4389426550","https://openalex.org/W6784333009","https://openalex.org/W6792155083","https://openalex.org/W6810896751","https://openalex.org/W6852242988"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":{"The":[0],"annotation":[1,41,75],"of":[2,27,57,63,73,113,128],"cell":[3,43,87,138,160],"types":[4,88,139,161],"based":[5,95],"on":[6,96],"single-cell":[7,18],"RNA":[8],"sequencing":[9,58],"(scRNA-seq)":[10],"data":[11,64,142],"is":[12,48,81,132],"a":[13,24,82,144,154],"critical":[14],"downstream":[15],"task":[16],"in":[17,89,140],"analysis,":[19],"with":[20],"significant":[21],"implications":[22],"for":[23,42,70,85],"deeper":[25],"understanding":[26],"biological":[28],"processes.":[29],"Most":[30],"analytical":[31],"methods":[32],"cluster":[33],"cells":[34,119],"by":[35,115],"unsupervised":[36],"clustering,":[37],"which":[38,92],"requires":[39],"manual":[40,163],"type":[44,74],"determination.":[45],"This":[46],"procedure":[47],"time-overwhelming":[49],"and":[50,66,99,111,122,157],"non-repeatable.":[51],"To":[52,125],"accommodate":[53],"the":[54,61,109,126,133],"exponential":[55],"growth":[56],"cells,":[59],"reduce":[60],"impact":[62],"bias,":[65],"integrate":[67],"large-scale":[68],"datasets":[69],"further":[71],"improvement":[72],"accuracy,":[76],"we":[77],"proposed":[78],"scSwinTNet.":[79],"It":[80,150],"pre-trained":[83,145],"tool":[84],"annotating":[86],"scRNA-seq":[90,141],"data,":[91],"uses":[93],"self-attention":[94],"shifted":[97,146],"windows":[98],"enables":[100],"intelligent":[101],"information":[102],"extraction":[103],"from":[104,120],"gene":[105],"data.":[106],"We":[107],"demonstrated":[108],"effectiveness":[110],"robustness":[112],"scSwinTNet":[114,131],"using":[116,143],"399":[117],"760":[118],"human":[121],"mouse":[123],"tissues.":[124],"best":[127],"our":[129],"knowledge,":[130],"first":[134],"model":[135],"to":[136],"annotate":[137],"window":[147],"attention-based":[148],"model.":[149],"does":[151],"not":[152],"require":[153],"priori":[155],"knowledge":[156],"accurately":[158],"annotates":[159],"without":[162],"annotation.":[164]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
