{"id":"https://openalex.org/W4403210286","doi":"https://doi.org/10.1109/jbhi.2024.3476120","title":"DTI-MvSCA: An Anti-Over-Smoothing Multi-View Framework With Negative Sample Selection for Predicting Drug-Target Interactions","display_name":"DTI-MvSCA: An Anti-Over-Smoothing Multi-View Framework With Negative Sample Selection for Predicting Drug-Target Interactions","publication_year":2024,"publication_date":"2024-10-08","ids":{"openalex":"https://openalex.org/W4403210286","doi":"https://doi.org/10.1109/jbhi.2024.3476120"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2024.3476120","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3476120","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007339758","display_name":"Lihong Peng","orcid":"https://orcid.org/0000-0002-2321-3901"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lihong Peng","raw_affiliation_strings":["College of Life Science and Chemistry, Hunan University of Technology, Hunan, China"],"affiliations":[{"raw_affiliation_string":"College of Life Science and Chemistry, Hunan University of Technology, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056835806","display_name":"Zongzheng Bai","orcid":"https://orcid.org/0009-0009-3164-1496"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zongzheng Bai","raw_affiliation_strings":["College of Life Science and Chemistry, Hunan University of Technology, Hunan, China"],"affiliations":[{"raw_affiliation_string":"College of Life Science and Chemistry, Hunan University of Technology, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032470574","display_name":"L. C. Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longlong Liu","raw_affiliation_strings":["College of Life Science and Chemistry, Hunan University of Technology, Hunan, China"],"affiliations":[{"raw_affiliation_string":"College of Life Science and Chemistry, Hunan University of Technology, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100913813","display_name":"Long Yang","orcid":"https://orcid.org/0009-0002-6008-2215"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Long Yang","raw_affiliation_strings":["College of Life Science and Chemistry, Hunan University of Technology, Hunan, China"],"affiliations":[{"raw_affiliation_string":"College of Life Science and Chemistry, Hunan University of Technology, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100316937","display_name":"Xin Liu","orcid":"https://orcid.org/0009-0009-8661-9288"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Liu","raw_affiliation_strings":["College of Life Science and Chemistry, Hunan University of Technology, Hunan, China"],"affiliations":[{"raw_affiliation_string":"College of Life Science and Chemistry, Hunan University of Technology, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100337272","display_name":"Min Chen","orcid":"https://orcid.org/0000-0003-3439-3183"},"institutions":[{"id":"https://openalex.org/I96478251","display_name":"Hunan Institute of Technology","ror":"https://ror.org/04n3k2k71","country_code":"CN","type":"education","lineage":["https://openalex.org/I96478251"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Chen","raw_affiliation_strings":["School of Computer Science, Hunan Institute of Technology, Hengyang, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan Institute of Technology, Hengyang, China","institution_ids":["https://openalex.org/I96478251"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036210249","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9028-5342"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xing Chen","raw_affiliation_strings":["School of Science, Jiangnan University, Wuxi, China"],"affiliations":[{"raw_affiliation_string":"School of Science, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5007339758"],"corresponding_institution_ids":["https://openalex.org/I49934816"],"apc_list":null,"apc_paid":null,"fwci":6.8221,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.97459893,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"29","issue":"1","first_page":"711","last_page":"723"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9006999731063843,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/smoothing","display_name":"Smoothing","score":0.6434437036514282},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.6425619125366211},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6375803351402283},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5476750731468201},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4076806306838989},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.1836768388748169},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09147912263870239}],"concepts":[{"id":"https://openalex.org/C3770464","wikidata":"https://www.wikidata.org/wiki/Q775963","display_name":"Smoothing","level":2,"score":0.6434437036514282},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.6425619125366211},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6375803351402283},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5476750731468201},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4076806306838989},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.1836768388748169},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09147912263870239},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/jbhi.2024.3476120","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3476120","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3220252743","display_name":null,"funder_award_id":"11931008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4477530077","display_name":null,"funder_award_id":"2022JJ30224","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"},{"id":"https://openalex.org/G487486546","display_name":null,"funder_award_id":"92370131","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5040992507","display_name":null,"funder_award_id":"62072172","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5135434113","display_name":null,"funder_award_id":"2023JJ50201","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322866","display_name":"Natural Science Foundation of Hainan Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1521626043","https://openalex.org/W1975414584","https://openalex.org/W2062941476","https://openalex.org/W2122863289","https://openalex.org/W2124001239","https://openalex.org/W2142572836","https://openalex.org/W2145578524","https://openalex.org/W2526925775","https://openalex.org/W2540547679","https://openalex.org/W2753953057","https://openalex.org/W2767891136","https://openalex.org/W2913030342","https://openalex.org/W2924557457","https://openalex.org/W2951512731","https://openalex.org/W2998496395","https://openalex.org/W3012012790","https://openalex.org/W3021338900","https://openalex.org/W3085429933","https://openalex.org/W3093194543","https://openalex.org/W3107527779","https://openalex.org/W3113831423","https://openalex.org/W3136918052","https://openalex.org/W3158002239","https://openalex.org/W3167993868","https://openalex.org/W3206937279","https://openalex.org/W3217681006","https://openalex.org/W4206369686","https://openalex.org/W4211219865","https://openalex.org/W4282913408","https://openalex.org/W4313423934","https://openalex.org/W4323653169","https://openalex.org/W4380370418","https://openalex.org/W4381620398","https://openalex.org/W4385245566","https://openalex.org/W4385330534","https://openalex.org/W4386575275","https://openalex.org/W4387219655","https://openalex.org/W4387682146","https://openalex.org/W4388756595","https://openalex.org/W4388878502","https://openalex.org/W4389131658","https://openalex.org/W4389918314","https://openalex.org/W4390066222","https://openalex.org/W4391562790","https://openalex.org/W4391708443","https://openalex.org/W4392111029","https://openalex.org/W4392564168","https://openalex.org/W4392693790","https://openalex.org/W4396668189","https://openalex.org/W4396833369","https://openalex.org/W4401070379","https://openalex.org/W4401532898","https://openalex.org/W6680306614","https://openalex.org/W6745537798","https://openalex.org/W6748816842","https://openalex.org/W6803537983","https://openalex.org/W6862492436","https://openalex.org/W6870349354"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W1978572805","https://openalex.org/W2383807498","https://openalex.org/W1997992934","https://openalex.org/W1987225439","https://openalex.org/W4238188170","https://openalex.org/W2125114371","https://openalex.org/W2019977573","https://openalex.org/W2149980199"],"abstract_inverted_index":{"Predicting":[0],"potential":[1,216],"drug-target":[2],"interactions":[3],"(DTIs)":[4],"facilitates":[5],"to":[6,47,214],"accelerate":[7],"drug":[8],"discovery":[9],"and":[10,51,105,143,161,173,180,202],"reduce":[11],"development":[12],"cost.":[13],"Current":[14],"deep":[15,211],"learning-based":[16],"methods":[17,57],"exhibit":[18],"high-performance":[19],"predictions,":[20],"but":[21],"three":[22],"challenges":[23],"remain:":[24],"first,":[25],"the":[26,33,44,48,61,74,108,129,140,162,190,194],"absence":[27],"of":[28,193],"negative":[29,102,196],"DTIs":[30,197],"severely":[31],"limits":[32],"model":[34,49],"performance.":[35],"Moreover,":[36],"existing":[37],"graph":[38,52,134,147],"neural":[39,81,118,131,159],"networks":[40],"are":[41],"beset":[42],"with":[43,92,99],"scalability":[45],"due":[46],"complexity":[50],"size.":[53],"More":[54],"importantly,":[55],"most":[56],"focus":[58],"on":[59,125,139,154,170],"learning":[60,137,152,212],"topological":[62,135],"features":[63,67],"while":[64],"ignoring":[65],"node":[66,150],"during":[68],"DTI":[69,87,103],"representation":[70],"learning.":[71],"To":[72],"solve":[73],"limitations,":[75],"here,":[76],"we":[77],"develop":[78],"a":[79,94,112,199,209],"multi-view":[80,130],"network":[82,98,132],"framework":[83,90],"called":[84],"DTI-MvSCA":[85,177,207],"for":[86],"identification.":[88],"This":[89],"begins":[91],"constructing":[93],"drug-protein":[95],"pair":[96],"(DPP)":[97],"matrix":[100],"operation-based":[101],"selection,":[104],"then":[106],"learns":[107],"DPP":[109,123],"representations":[110],"through":[111],"<underline":[113,156],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[114,116,145,157,164],"xmlns:xlink=\"http://www.w3.org/1999/xlink\"><b>M</b></u>ulti-<bold":[115],"xmlns:xlink=\"http://www.w3.org/1999/xlink\"><u>v</u></b>iew":[117],"network,":[119,149,160],"finally":[120],"classifies":[121],"each":[122],"based":[124,138,153],"multilayer":[126],"perceptron.":[127],"Particularly,":[128],"integrates":[133],"feature":[136,151,191],"self-attention":[141],"mechanism":[142],"<bold":[144,163],"xmlns:xlink=\"http://www.w3.org/1999/xlink\"><u>S</u></b>HADOW":[146],"attention":[148],"1D":[155],"xmlns:xlink=\"http://www.w3.org/1999/xlink\"><b>C</b></u>onvolutional":[158],"xmlns:xlink=\"http://www.w3.org/1999/xlink\"><u>A</u></b>ttention":[165],"mechanism.":[166],"An":[167],"in-depth":[168],"experiment":[169],"DrugBank":[171],"V3.0":[172],"V5.0":[174],"showed":[175],"that":[176],"obtained":[178],"precise":[179],"robust":[181],"predictions":[182],"against":[183],"five":[184],"state-of-the-art":[185],"baseline":[186],"methods.":[187],"Furthermore,":[188],"visualizing":[189],"distributions":[192],"selected":[195],"exhibits":[198],"more":[200],"distinguishable":[201],"clearer":[203],"boundary.":[204],"In":[205],"summary,":[206],"provides":[208],"useful":[210],"tool":[213],"investigate":[215],"DTIs.":[217]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
