{"id":"https://openalex.org/W4401879977","doi":"https://doi.org/10.1109/jbhi.2024.3431693","title":"Multi-View Multiattention Graph Learning With Stack Deep Matrix Factorization for circRNA-Drug Sensitivity Association Identification","display_name":"Multi-View Multiattention Graph Learning With Stack Deep Matrix Factorization for circRNA-Drug Sensitivity Association Identification","publication_year":2024,"publication_date":"2024-08-26","ids":{"openalex":"https://openalex.org/W4401879977","doi":"https://doi.org/10.1109/jbhi.2024.3431693","pmid":"https://pubmed.ncbi.nlm.nih.gov/39186430"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2024.3431693","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3431693","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027873098","display_name":"Ning Ai","orcid":"https://orcid.org/0000-0002-4791-4307"},"institutions":[{"id":"https://openalex.org/I102208913","display_name":"Shihezi University","ror":"https://ror.org/04x0kvm78","country_code":"CN","type":"education","lineage":["https://openalex.org/I102208913"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ning Ai","raw_affiliation_strings":["College of Mechanical and Electrical Engineering, Shihezi University, Shihezi, China"],"affiliations":[{"raw_affiliation_string":"College of Mechanical and Electrical Engineering, Shihezi University, Shihezi, China","institution_ids":["https://openalex.org/I102208913"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115687648","display_name":"Haoliang Yuan","orcid":"https://orcid.org/0000-0002-1071-2007"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoliang Yuan","raw_affiliation_strings":["Guangdong University of Technology, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"Guangdong University of Technology, Guangdong, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059383536","display_name":"Yong Liang","orcid":"https://orcid.org/0000-0003-2403-1971"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Liang","raw_affiliation_strings":["Peng Cheng Laboratory, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Peng Cheng Laboratory, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066553282","display_name":"Shanghui Lu","orcid":"https://orcid.org/0009-0008-2029-5332"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Shanghui Lu","raw_affiliation_strings":["Institute of Systems Engineering, Macau University of Science and Technology, Taipa, Macau"],"affiliations":[{"raw_affiliation_string":"Institute of Systems Engineering, Macau University of Science and Technology, Taipa, Macau","institution_ids":["https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047045552","display_name":"Dong Ouyang","orcid":null},"institutions":[{"id":"https://openalex.org/I176834541","display_name":"Guangdong Medical College","ror":"https://ror.org/04k5rxe29","country_code":"CN","type":"education","lineage":["https://openalex.org/I176834541"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong Ouyang","raw_affiliation_strings":["School of Biomedical Engineering, Guangdong Medical University, Dongguan, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Guangdong Medical University, Dongguan, China","institution_ids":["https://openalex.org/I176834541"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032784865","display_name":"Qi Hong Lai","orcid":"https://orcid.org/0000-0001-6983-6007"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qi Hong Lai","raw_affiliation_strings":["Lincoln College, University of Oxford, Oxford, U.K"],"affiliations":[{"raw_affiliation_string":"Lincoln College, University of Oxford, Oxford, U.K","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029853791","display_name":"Loi Lei Lai","orcid":"https://orcid.org/0000-0003-4786-7931"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Loi Lei Lai","raw_affiliation_strings":["DRPT International Incorprated, Perth, Western, Australia"],"affiliations":[{"raw_affiliation_string":"DRPT International Incorprated, Perth, Western, Australia","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5027873098"],"corresponding_institution_ids":["https://openalex.org/I102208913"],"apc_list":null,"apc_paid":null,"fwci":1.2147,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.78805252,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"28","issue":"12","first_page":"7670","last_page":"7682"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.651201069355011},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.6398061513900757},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5150617957115173},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.48699814081192017},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47002100944519043},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.4360945224761963},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.432184636592865},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34753692150115967},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3277928829193115},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19321158528327942},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1484571099281311},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10138082504272461},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08838698267936707}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.651201069355011},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.6398061513900757},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5150617957115173},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.48699814081192017},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47002100944519043},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.4360945224761963},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.432184636592865},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34753692150115967},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3277928829193115},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19321158528327942},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1484571099281311},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10138082504272461},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08838698267936707},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2024.3431693","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3431693","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:39186430","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39186430","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2200584754","display_name":null,"funder_award_id":"12326604","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1869200070","https://openalex.org/W2003436246","https://openalex.org/W2058835062","https://openalex.org/W2108068107","https://openalex.org/W2119523409","https://openalex.org/W2220553089","https://openalex.org/W2462714215","https://openalex.org/W2752943586","https://openalex.org/W2772618228","https://openalex.org/W2803122042","https://openalex.org/W2892880750","https://openalex.org/W2896457183","https://openalex.org/W2916534270","https://openalex.org/W2966011293","https://openalex.org/W2969715183","https://openalex.org/W2990691215","https://openalex.org/W3012816161","https://openalex.org/W3016216710","https://openalex.org/W3034046925","https://openalex.org/W3057511387","https://openalex.org/W3097885939","https://openalex.org/W3109958717","https://openalex.org/W3157330827","https://openalex.org/W3164598255","https://openalex.org/W3170286690","https://openalex.org/W3177710193","https://openalex.org/W3200563416","https://openalex.org/W4200144569","https://openalex.org/W4212803602","https://openalex.org/W4212985704","https://openalex.org/W4213045933","https://openalex.org/W4220796987","https://openalex.org/W4221022534","https://openalex.org/W4221023051","https://openalex.org/W4225752318","https://openalex.org/W4229005146","https://openalex.org/W4294968705","https://openalex.org/W4297733535","https://openalex.org/W4313707003","https://openalex.org/W4319453988","https://openalex.org/W4323974793","https://openalex.org/W4379380529","https://openalex.org/W4383198266","https://openalex.org/W4383711298","https://openalex.org/W4385245566","https://openalex.org/W4385331028","https://openalex.org/W4385627124","https://openalex.org/W4390058513","https://openalex.org/W6755207826","https://openalex.org/W6755573351"],"related_works":["https://openalex.org/W2378757965","https://openalex.org/W4224903346","https://openalex.org/W1593262897","https://openalex.org/W2372869593","https://openalex.org/W2384194537","https://openalex.org/W2532801570","https://openalex.org/W4385627933","https://openalex.org/W2480127678","https://openalex.org/W2806270048","https://openalex.org/W4310605282"],"abstract_inverted_index":{"Identifying":[0],"circular":[1],"RNA":[2],"(circRNA)-drug":[3],"sensitivity":[4],"association":[5],"(CDsA)":[6],"is":[7,21,110,164],"crucial":[8],"for":[9,18,71,140],"advancing":[10],"drug":[11],"development.":[12],"As":[13,61],"conducting":[14],"traditional":[15],"wet":[16],"experiments":[17],"determining":[19],"CDsA":[20,50],"costly":[22],"and":[23,53,81,89,95,101,173,199],"inefficient,":[24],"calculation":[25],"methods":[26,84],"have":[27],"already":[28],"proven":[29],"to":[30,35,85,112,136,155,166],"be":[31],"a":[32,62,66,132],"valid":[33],"approach":[34],"cope":[36],"with":[37,122,194],"this":[38],"problem.":[39],"However,":[40],"there":[41],"exists":[42],"limited":[43],"research":[44],"addressing":[45],"the":[46,49,91,104,123,141,153,157,168,175,179,209,213],"prediction":[47,51,182],"of":[48,93,99,143,171,178,197,216],"problem,":[52],"certain":[54],"discrepancies":[55],"persist,":[56],"particularly":[57],"concerning":[58],"false-negative":[59],"associations.":[60],"consequence,":[63],"we":[64],"present":[65],"multi-view":[67,127],"framework,":[68],"called":[69],"MAGSDMF,":[70],"identifying":[72],"latent":[73,158],"CDsA.":[74,145],"Firstly,":[75],"MAGSDMF":[76,130,147,172,187],"applies":[77],"ultiple":[78],"ttention":[79],"mechanisms":[80],"raph":[82],"learning":[83,162,176],"dynamically":[86],"extract":[87,114],"features":[88,92,115,139],"strengthen":[90],"inside":[94],"across":[96],"multi-similarity":[97,120],"networks":[98,121],"circRNA":[100],"drug.":[102],"Secondly,":[103],"tack":[105],"eep":[106],"atrix":[107],"Factorization":[108],"(SDMF)":[109],"devised":[111],"directly":[113],"from":[116],"CDsAs.":[117,159],"We":[118],"consider":[119],"original":[124],"CDsAs":[125],"as":[126],"information.":[128],"Thirdly,":[129],"utilizes":[131],"multi-attention":[133],"channel":[134],"mechanism":[135],"integrate":[137],"these":[138],"purpose":[142],"reconstructing":[144],"Finally,":[146],"performs":[148],"another":[149],"DMF":[150],"based":[151,201],"on":[152,191,202],"reconstruction":[154],"identify":[156],"Simultaneously,":[160],"contrastive":[161],"(CL)":[163],"implemented":[165],"enhance":[167],"generalization":[169],"capability":[170],"oversee":[174],"process":[177],"underlying":[180],"links":[181],"task.":[183],"In":[184],"comparative":[185],"experiments,":[186],"achieves":[188],"superior":[189],"performance":[190],"two":[192],"datasets":[193],"AUC":[195],"values":[196],"0.9743":[198],"0.9739":[200],"5-fold":[203],"cross-validation.":[204],"Moreover,":[205],"in":[206],"case":[207],"studies,":[208],"achievements":[210],"further":[211],"validate":[212],"identification":[214],"reliability":[215],"MAGSDMF.":[217]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
