{"id":"https://openalex.org/W4400448110","doi":"https://doi.org/10.1109/jbhi.2024.3424848","title":"Identifying Associations Between Small Nucleolar RNAs and Diseases via Graph Convolutional Network and Attention Mechanism","display_name":"Identifying Associations Between Small Nucleolar RNAs and Diseases via Graph Convolutional Network and Attention Mechanism","publication_year":2024,"publication_date":"2024-07-09","ids":{"openalex":"https://openalex.org/W4400448110","doi":"https://doi.org/10.1109/jbhi.2024.3424848","pmid":"https://pubmed.ncbi.nlm.nih.gov/38980776"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2024.3424848","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3424848","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011034666","display_name":"Shuchen Liu","orcid":"https://orcid.org/0009-0002-8970-484X"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuchen Liu","raw_affiliation_strings":["Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China"],"raw_orcid":"https://orcid.org/0009-0002-8970-484X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009921747","display_name":"Wen Zhu","orcid":"https://orcid.org/0000-0002-1870-9400"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen Zhu","raw_affiliation_strings":["Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China"],"raw_orcid":"https://orcid.org/0000-0002-1870-9400","affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115602726","display_name":"Peng Wang","orcid":"https://orcid.org/0000-0002-5716-9937"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Wang","raw_affiliation_strings":["Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024993799","display_name":"Shaoyou Yu","orcid":"https://orcid.org/0000-0002-2049-6571"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaoyou Yu","raw_affiliation_strings":["Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China"],"raw_orcid":"https://orcid.org/0000-0002-2049-6571","affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangxiang Wu","raw_affiliation_strings":["Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Science and Application of Hainan Province, Haikou, China","institution_ids":["https://openalex.org/I20942203"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I20942203"],"apc_list":null,"apc_paid":null,"fwci":1.7308,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.85151615,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"28","issue":"12","first_page":"7647","last_page":"7658"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6904325485229492},{"id":"https://openalex.org/keywords/small-nucleolar-rna","display_name":"Small nucleolar RNA","score":0.6759254336357117},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5425238609313965},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5194677710533142},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5100269913673401},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4455234110355377},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4206414222717285},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38639935851097107},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37216421961784363},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.21671926975250244},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18245211243629456},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.11241355538368225},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08349454402923584}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6904325485229492},{"id":"https://openalex.org/C179255354","wikidata":"https://www.wikidata.org/wiki/Q284416","display_name":"Small nucleolar RNA","level":5,"score":0.6759254336357117},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5425238609313965},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5194677710533142},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5100269913673401},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4455234110355377},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4206414222717285},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38639935851097107},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37216421961784363},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.21671926975250244},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18245211243629456},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.11241355538368225},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08349454402923584},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2024.3424848","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3424848","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:38980776","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38980776","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3160257714","display_name":null,"funder_award_id":"62362027","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G835853891","display_name":null,"funder_award_id":"62362028","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W2124045889","https://openalex.org/W2140099276","https://openalex.org/W2979026278","https://openalex.org/W3002402252","https://openalex.org/W3082034060","https://openalex.org/W3120907553","https://openalex.org/W4205614329","https://openalex.org/W4205850138","https://openalex.org/W4206002665","https://openalex.org/W4210702200","https://openalex.org/W4210852391","https://openalex.org/W4211182482","https://openalex.org/W4220859562","https://openalex.org/W4225691572","https://openalex.org/W4225845204","https://openalex.org/W4226087812","https://openalex.org/W4280506442","https://openalex.org/W4280587098","https://openalex.org/W4280646311","https://openalex.org/W4282034103","https://openalex.org/W4283772644","https://openalex.org/W4285041302","https://openalex.org/W4288720745","https://openalex.org/W4291926474","https://openalex.org/W4293659615","https://openalex.org/W4294379436","https://openalex.org/W4297231005","https://openalex.org/W4297891375","https://openalex.org/W4300594341","https://openalex.org/W4307440230","https://openalex.org/W4309000351","https://openalex.org/W4312094035","https://openalex.org/W4321457619","https://openalex.org/W4322614756","https://openalex.org/W4322627364","https://openalex.org/W4322766276","https://openalex.org/W4323868082","https://openalex.org/W4360770766","https://openalex.org/W4362496254","https://openalex.org/W4366815843","https://openalex.org/W4367317875","https://openalex.org/W4378530286","https://openalex.org/W4381433853","https://openalex.org/W4383619745","https://openalex.org/W4386963628","https://openalex.org/W4387357442","https://openalex.org/W4388661182","https://openalex.org/W4388807207","https://openalex.org/W4390717037","https://openalex.org/W4392128268","https://openalex.org/W4396749103","https://openalex.org/W4402922011","https://openalex.org/W6730084236"],"related_works":["https://openalex.org/W2263534175","https://openalex.org/W4239269398","https://openalex.org/W2044575338","https://openalex.org/W2378816606","https://openalex.org/W1985480639","https://openalex.org/W2108297093","https://openalex.org/W2603331522","https://openalex.org/W1975190048","https://openalex.org/W2135273573","https://openalex.org/W2126924668"],"abstract_inverted_index":{"Research":[0],"has":[1],"shown":[2],"that":[3,181],"small":[4],"nucleolar":[5],"RNAs":[6],"(snoRNAs)":[7],"play":[8],"crucial":[9,46],"roles":[10],"in":[11,155,187],"various":[12],"biological":[13,34,86],"processes,":[14],"and":[15,32,38,66,80,89,99,112,135,185,189,192],"understanding":[16],"disease":[17,101],"pathogenesis":[18],"by":[19,105],"studying":[20],"their":[21,158],"relationship":[22],"with":[23],"diseases":[24,81],"is":[25,45,72],"beneficial.":[26],"Currently,":[27],"known":[28],"associations":[29,60],"are":[30,36,82,103,116,124,164],"insufficient,":[31],"conventional":[33],"experiments":[35],"costly":[37],"time-consuming.":[39],"Therefore,":[40],"developing":[41],"efficient":[42],"computational":[43],"methods":[44,197],"for":[47,150],"identifying":[48],"potential":[49],"snoRNA-disease":[50,59,176],"associations.":[51,177],"In":[52],"this":[53],"paper,":[54],"a":[55,138,168],"method":[56],"to":[57,143,157,167,174],"identify":[58,175],"based":[61,84],"on":[62,85,198],"graph":[63,68,115,131,140],"convolutional":[64,132],"network":[65,133,172],"multi-view":[67,139],"attention":[69,141],"mechanism":[70,142],"(GCASDA)":[71],"proposed.":[73],"Firstly,":[74],"the":[75,90,93,96,100,127,199,206,212],"similarity":[76],"matrices":[77],"of":[78,92,121,153,201,215],"snoRNAs":[79],"calculated":[83],"entity-related":[87],"information,":[88],"weights":[91],"edges":[94],"between":[95],"snoRNA":[97],"nodes":[98,102],"supplemented":[104],"random":[106],"forest.":[107],"Then":[108],"two":[109],"homogeneous":[110],"graphs":[111,128],"one":[113],"heterogeneous":[114],"constructed.":[117],"Subsequently,":[118],"different":[119,202],"types":[120],"embedded":[122,146],"features":[123,163],"extracted":[125],"from":[126],"using":[129],"specific":[130],"structure":[134],"integrated":[136],"through":[137],"obtain":[144],"node":[145,161],"feature":[147],"representations.":[148],"Finally,":[149],"each":[151],"pair":[152],"nodes,":[154],"addition":[156],"global":[159],"features,":[160],"interaction":[162],"passed":[165],"together":[166],"multilayer":[169],"perceptron":[170],"neural":[171],"(MLP)":[173],"Experimental":[178],"results":[179],"show":[180],"GCASDA":[182],"achieves":[183],"0.9356":[184],"0.9294":[186],"AUC":[188],"AUPR,":[190],"respectively,":[191],"significantly":[193],"outperformed":[194],"other":[195],"state-of-the-art":[196],"basis":[200],"evaluation":[203],"metrics.":[204],"Furthermore,":[205],"case":[207],"study":[208],"could":[209],"further":[210],"demonstrate":[211],"realistic":[213],"feasibility":[214],"GCASDA.":[216]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
