{"id":"https://openalex.org/W4400275983","doi":"https://doi.org/10.1109/jbhi.2024.3422488","title":"Self-Supervised Pre-Training via Multi-View Graph Information Bottleneck for Molecular Property Prediction","display_name":"Self-Supervised Pre-Training via Multi-View Graph Information Bottleneck for Molecular Property Prediction","publication_year":2024,"publication_date":"2024-07-03","ids":{"openalex":"https://openalex.org/W4400275983","doi":"https://doi.org/10.1109/jbhi.2024.3422488","pmid":"https://pubmed.ncbi.nlm.nih.gov/38959149"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2024.3422488","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3422488","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087727212","display_name":"Xuan Zang","orcid":"https://orcid.org/0000-0002-5366-6055"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuan Zang","raw_affiliation_strings":["School of Computer Science and Techonology, Harbin Institute of Technology (Shenzhen), Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-5366-6055","affiliations":[{"raw_affiliation_string":"School of Computer Science and Techonology, Harbin Institute of Technology (Shenzhen), Shenzhen, China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102857972","display_name":"Junjie Zhang","orcid":"https://orcid.org/0009-0009-3903-7074"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junjie Zhang","raw_affiliation_strings":["School of Computer Science and Techonology, Harbin Institute of Technology (Shenzhen), Shenzhen, China"],"raw_orcid":"https://orcid.org/0009-0009-3903-7074","affiliations":[{"raw_affiliation_string":"School of Computer Science and Techonology, Harbin Institute of Technology (Shenzhen), Shenzhen, China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014238603","display_name":"Buzhou Tang","orcid":"https://orcid.org/0000-0003-0271-8246"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Buzhou Tang","raw_affiliation_strings":["School of Computer Science and Techonology, Harbin Institute of Technology, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0003-0271-8246","affiliations":[{"raw_affiliation_string":"School of Computer Science and Techonology, Harbin Institute of Technology, Shenzhen, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0373,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.77965378,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"28","issue":"12","first_page":"7659","last_page":"7669"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.731198787689209},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7029237151145935},{"id":"https://openalex.org/keywords/molecular-graph","display_name":"Molecular graph","score":0.6881416440010071},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.5940138697624207},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5432220697402954},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5388803482055664},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5086218118667603},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.49699071049690247},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4450902044773102},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14229798316955566}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.731198787689209},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7029237151145935},{"id":"https://openalex.org/C2780022179","wikidata":"https://www.wikidata.org/wiki/Q1986794","display_name":"Molecular graph","level":3,"score":0.6881416440010071},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.5940138697624207},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5432220697402954},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5388803482055664},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5086218118667603},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.49699071049690247},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4450902044773102},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14229798316955566},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2024.3422488","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3422488","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:38959149","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38959149","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4240257230","display_name":null,"funder_award_id":"93K172024K11","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5907662539","display_name":null,"funder_award_id":"2021ZD0113402","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7754457721","display_name":null,"funder_award_id":"HIT.DZJJ.2023117","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G965288165","display_name":null,"funder_award_id":"62276082","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1757990252","https://openalex.org/W1975147762","https://openalex.org/W1988037271","https://openalex.org/W2290847742","https://openalex.org/W2547875792","https://openalex.org/W2594183968","https://openalex.org/W2896457183","https://openalex.org/W2914757825","https://openalex.org/W2964184826","https://openalex.org/W2966357564","https://openalex.org/W2973114758","https://openalex.org/W3009321976","https://openalex.org/W3045928028","https://openalex.org/W3078407515","https://openalex.org/W3080997787","https://openalex.org/W3100157108","https://openalex.org/W3215452784","https://openalex.org/W4214868967","https://openalex.org/W4221023051","https://openalex.org/W4282004119","https://openalex.org/W4282975557","https://openalex.org/W4290875097","https://openalex.org/W4290876361","https://openalex.org/W4312347724","https://openalex.org/W4313485929","https://openalex.org/W4365455552","https://openalex.org/W4367860565","https://openalex.org/W4381679608","https://openalex.org/W4382240222","https://openalex.org/W4385245566","https://openalex.org/W4385687011","https://openalex.org/W4390604335","https://openalex.org/W6726873649","https://openalex.org/W6729448088","https://openalex.org/W6729906282","https://openalex.org/W6736685754","https://openalex.org/W6745537798","https://openalex.org/W6747927160","https://openalex.org/W6754929296","https://openalex.org/W6766156693","https://openalex.org/W6772452955","https://openalex.org/W6784614190","https://openalex.org/W6784694379","https://openalex.org/W6784958482","https://openalex.org/W6789810805","https://openalex.org/W6795898371","https://openalex.org/W6802320626","https://openalex.org/W6803136014","https://openalex.org/W6810309504","https://openalex.org/W6852157329"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W2013842271","https://openalex.org/W2808877228"],"abstract_inverted_index":{"Molecular":[0,116],"representation":[1,50],"learning":[2,16],"has":[3],"remarkably":[4],"accelerated":[5],"the":[6,29,84,114,130,134,145,150,155,163,166,173,178,197],"development":[7],"of":[8,31,89,165,175,201],"drug":[9],"analysis":[10,161],"and":[11,78,87,133,148,171,192,199],"discovery.":[12],"It":[13],"implements":[14],"machine":[15],"methods":[17,57],"to":[18,28,48,82,98,143],"encode":[19],"molecule":[20],"embeddings":[21],"for":[22,105,122],"diverse":[23],"downstream":[24],"drug-related":[25],"tasks.":[26],"Due":[27],"scarcity":[30],"labeled":[32],"molecular":[33,36,46,63,106,123,127,157,184],"data,":[34],"self-supervised":[35,115,156,167],"pre-training":[37,56,158],"is":[38,102],"promising":[39],"as":[40,75],"it":[41],"can":[42],"handle":[43],"large-scale":[44],"unlabeled":[45],"data":[47],"prompt":[49],"learning.":[51,107],"Although":[52],"many":[53],"universal":[54],"graph":[55,71,140,151,168],"have":[58],"been":[59],"successfully":[60],"introduced":[61],"into":[62,154],"learning,":[64],"there":[65],"still":[66],"exist":[67],"some":[68],"limitations.":[69],"Many":[70],"augmentation":[72],"methods,":[73],"such":[74],"atom":[76,131],"deletion":[77],"bond":[79],"perturbation,":[80],"tend":[81],"destroy":[83],"intrinsic":[85],"properties":[86,101],"connections":[88],"molecules.":[90],"In":[91],"addition,":[92],"identifying":[93],"subgraphs":[94],"that":[95],"are":[96],"important":[97],"specific":[99],"chemical":[100],"also":[103],"challenging":[104],"To":[108],"address":[109],"these":[110],"limitations,":[111],"we":[112],"propose":[113],"Graph":[117],"Information":[118],"Bottleneck":[119],"(MGIB)":[120],"model":[121],"pre-training.":[124],"MGIB":[125,176],"observes":[126],"graphs":[128],"from":[129],"view":[132],"motif":[135],"view,":[136],"deploys":[137],"a":[138],"learnable":[139],"compression":[141],"process":[142],"extract":[144],"core":[146],"subgraphs,":[147],"extends":[149],"information":[152,169],"bottleneck":[153,170],"framework.":[159],"Model":[160],"validates":[162],"contribution":[164],"illustrates":[172],"interpretability":[174],"through":[177],"extracted":[179],"subgraphs.":[180],"Extensive":[181],"experiments":[182],"involving":[183],"property":[185],"prediction,":[186],"including":[187],"7":[188],"binary":[189],"classification":[190],"tasks":[191,195],"6":[193],"regression":[194],"demonstrate":[196],"effectiveness":[198],"superiority":[200],"our":[202],"proposed":[203],"MGIB.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-17T09:13:05.818461","created_date":"2025-10-10T00:00:00"}
