{"id":"https://openalex.org/W4396853218","doi":"https://doi.org/10.1109/jbhi.2024.3400521","title":"MultiModRLBP: A Deep Learning Approach for Multi-Modal RNA-Small Molecule Ligand Binding Sites Prediction","display_name":"MultiModRLBP: A Deep Learning Approach for Multi-Modal RNA-Small Molecule Ligand Binding Sites Prediction","publication_year":2024,"publication_date":"2024-05-13","ids":{"openalex":"https://openalex.org/W4396853218","doi":"https://doi.org/10.1109/jbhi.2024.3400521","pmid":"https://pubmed.ncbi.nlm.nih.gov/38739505"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2024.3400521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3400521","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016674975","display_name":"Junkai Wang","orcid":"https://orcid.org/0009-0004-9727-395X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junkai Wang","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","School of Computer Science and Technology, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0004-9727-395X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010017304","display_name":"Lijun Quan","orcid":"https://orcid.org/0000-0003-4551-4198"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijun Quan","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","Collaborative Innovation Center of Novel Software Technology and Industrialization, Jiangsu, China","School of Computer Science and Technology, Soochow University, Jiangsu, China","Province Key Lab for Information Processing Technologies, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0000-0003-4551-4198","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Collaborative Innovation Center of Novel Software Technology and Industrialization, Jiangsu, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Province Key Lab for Information Processing Technologies, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101733777","display_name":"Zhi Jin","orcid":"https://orcid.org/0009-0009-5688-489X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi Jin","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","School of Computer Science and Technology, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0009-5688-489X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076525932","display_name":"Hongjie Wu","orcid":"https://orcid.org/0000-0001-5921-8707"},"institutions":[{"id":"https://openalex.org/I308837","display_name":"Suzhou University of Science and Technology","ror":"https://ror.org/04en8wb91","country_code":"CN","type":"education","lineage":["https://openalex.org/I308837"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongjie Wu","raw_affiliation_strings":["School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-5921-8707","affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Suzhou University of Science and Technology, Suzhou, China","institution_ids":["https://openalex.org/I308837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009818264","display_name":"Xuhao Ma","orcid":"https://orcid.org/0009-0006-1637-4746"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuhao Ma","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","School of Computer Science and Technology, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0006-1637-4746","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100617088","display_name":"Xuejiao Wang","orcid":"https://orcid.org/0009-0003-4163-4237"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuejiao Wang","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","School of Computer Science and Technology, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0003-4163-4237","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jingxin Xie","orcid":"https://orcid.org/0009-0007-3119-0635"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingxin Xie","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","School of Computer Science and Technology, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0007-3119-0635","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100711366","display_name":"Deng Pan","orcid":"https://orcid.org/0009-0006-2829-3425"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Deng Pan","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","School of Computer Science and Technology, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0006-2829-3425","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001768169","display_name":"Taoning Chen","orcid":"https://orcid.org/0009-0008-2778-5182"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Taoning Chen","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","School of Computer Science and Technology, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0008-2778-5182","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064852381","display_name":"Tingfang Wu","orcid":"https://orcid.org/0000-0001-8137-2436"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingfang Wu","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","Collaborative Innovation Center of Novel Software Technology and Industrialization, Jiangsu, China","Province Key Lab for Information Processing Technologies, Soochow University, Jiangsu, China","School of Computer Science and Technology, Soochow University, Jiangsu, China"],"raw_orcid":"https://orcid.org/0000-0001-8137-2436","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Collaborative Innovation Center of Novel Software Technology and Industrialization, Jiangsu, China","institution_ids":[]},{"raw_affiliation_string":"Province Key Lab for Information Processing Technologies, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061252858","display_name":"Qiang Lyu","orcid":"https://orcid.org/0000-0003-2371-835X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Lyu","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China","School of Computer Science and Technology, Soochow University, Jiangsu, China","Province Key Lab for Information Processing Technologies, Soochow University, Jiangsu, China","Collaborative Innovation Center of Novel Software Technology and Industrialization, Jiangsu, China"],"raw_orcid":"https://orcid.org/0000-0003-2371-835X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Province Key Lab for Information Processing Technologies, Soochow University, Jiangsu, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Collaborative Innovation Center of Novel Software Technology and Industrialization, Jiangsu, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.6342,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.90539453,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"28","issue":"8","first_page":"4995","last_page":"5006"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7743045091629028},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5903982520103455},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5078170895576477},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.4370368421077728},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.41701412200927734},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.4131927192211151},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3902382254600525},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.351914644241333},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3284267783164978},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2726646959781647},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1843927502632141},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17241215705871582}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7743045091629028},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5903982520103455},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5078170895576477},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.4370368421077728},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.41701412200927734},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.4131927192211151},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3902382254600525},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.351914644241333},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3284267783164978},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2726646959781647},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1843927502632141},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17241215705871582}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2024.3400521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3400521","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:38739505","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38739505","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4070125920","display_name":null,"funder_award_id":"62272335","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G739727963","display_name":null,"funder_award_id":"62002251","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1672171675","https://openalex.org/W1847618513","https://openalex.org/W1904365287","https://openalex.org/W2009349503","https://openalex.org/W2015611931","https://openalex.org/W2055043387","https://openalex.org/W2077064224","https://openalex.org/W2102803707","https://openalex.org/W2106478835","https://openalex.org/W2156125289","https://openalex.org/W2159801888","https://openalex.org/W2253581743","https://openalex.org/W2303521084","https://openalex.org/W2418483870","https://openalex.org/W2508330908","https://openalex.org/W2548501546","https://openalex.org/W2604314403","https://openalex.org/W2766737008","https://openalex.org/W2799691204","https://openalex.org/W2890850847","https://openalex.org/W2911947907","https://openalex.org/W2952209472","https://openalex.org/W2965489613","https://openalex.org/W2995514860","https://openalex.org/W3041118201","https://openalex.org/W3118778953","https://openalex.org/W3132447912","https://openalex.org/W3146944767","https://openalex.org/W3195513343","https://openalex.org/W3198747194","https://openalex.org/W4206607417","https://openalex.org/W4213095938","https://openalex.org/W4285414302","https://openalex.org/W4309362395","https://openalex.org/W4309670138","https://openalex.org/W4317776906","https://openalex.org/W4386088222","https://openalex.org/W4390563867","https://openalex.org/W6631190155","https://openalex.org/W6640036494","https://openalex.org/W6726873649","https://openalex.org/W6755207826"],"related_works":["https://openalex.org/W1472344963","https://openalex.org/W3093937951","https://openalex.org/W2554722417","https://openalex.org/W2581348958","https://openalex.org/W2264054990","https://openalex.org/W2581888268","https://openalex.org/W2902683473","https://openalex.org/W1989561030","https://openalex.org/W2088051090","https://openalex.org/W2010378972"],"abstract_inverted_index":{"This":[0,126],"study":[1],"aims":[2],"to":[3,14,117,132,146,272],"tackle":[4],"the":[5,16,20,32,50,55,84,106,121,129,139,202,212,233,240,252,258,270,292,296],"intricate":[6],"challenge":[7],"of":[8,22,54,123,195,276,298],"predicting":[9,224],"RNA-small":[10],"molecule":[11,81],"binding":[12,114,225,234,274],"sites":[13,115,226,235],"explore":[15],"potential":[17,249],"value":[18],"in":[19,223,290],"field":[21],"RNA":[23,56,63,67,78,102,108,151,190,253,259,277],"drug":[24],"targets.":[25],"To":[26],"address":[27],"this":[28,95],"challenge,":[29],"we":[30,73,154,179],"propose":[31],"MultiModRLBP":[33,130,156,210,242,268],"method,":[34],"which":[35],"integrates":[36],"multi-modal":[37],"features":[38,44],"using":[39],"deep":[40],"learning":[41],"algorithms.":[42],"These":[43,286],"include":[45],"3D":[46],"structural":[47,118,140,182,196],"properties":[48],"at":[49,138],"nucleotide":[51],"base":[52],"level":[53],"molecule,":[57],"relational":[58],"graphs":[59],"based":[60,172],"on":[61,157,169,173,185,216],"overall":[62],"structure,":[64],"and":[65,79,87,163,175,198,230],"rich":[66],"semantic":[68],"information.":[69],"In":[70],"our":[71],"investigation,":[72],"gathered":[74],"851":[75],"interactions":[76],"between":[77],"small":[80,170],"ligand":[82],"from":[83],"RNAglib":[85],"dataset":[86],"RLBind":[88],"training":[89,93],"set.":[90],"Unlike":[91],"conventional":[92],"sets,":[94,161,220],"collection":[96],"broadened":[97],"its":[98,144,166],"scope":[99],"by":[100],"including":[101],"complexes":[103],"that":[104,209,278],"have":[105],"same":[107,203],"sequence":[109,284],"but":[110],"change":[111],"their":[112],"respective":[113],"due":[116],"differences":[119],"or":[120,257],"presence":[122],"different":[124],"ligands.":[125,204],"enhancement":[127],"enables":[128],"model":[131],"more":[133],"accurately":[134],"capture":[135],"subtle":[136],"changes":[137,197],"level,":[141],"ultimately":[142],"improving":[143],"ability":[145],"discern":[147],"nuances":[148],"among":[149],"similar":[150],"conformations.":[152],"Furthermore,":[153],"evaluated":[155],"two":[158],"classic":[159,218],"test":[160,219],"Test18":[162],"Test3,":[164],"highlighting":[165],"performance":[167],"disparities":[168],"molecules":[171],"metal":[174],"non-metal":[176,228],"ions.":[177],"Additionally,":[178],"conducted":[180],"a":[181,248],"sensitivity":[183],"analysis":[184],"specific":[186],"complex":[187],"categories,":[188],"considering":[189],"instances":[191,231],"with":[192,295],"varying":[193],"degrees":[194],"whether":[199],"they":[200],"share":[201],"The":[205],"research":[206],"results":[207],"indicate":[208],"outperforms":[211],"current":[213],"state-of-the-art":[214],"methods":[215],"multiple":[217],"particularly":[221],"excelling":[222],"for":[227],"ions":[229],"where":[232],"are":[236,279],"widely":[237],"distributed":[238],"along":[239],"sequence.":[241],"also":[243],"can":[244],"be":[245],"used":[246],"as":[247],"tool":[250],"when":[251],"structure":[254,262],"is":[255,263],"perturbed":[256],"experimental":[260],"tertiary":[261],"not":[264],"available.":[265],"Most":[266],"importantly,":[267],"exhibits":[269],"capability":[271],"distinguish":[273],"characteristics":[275],"structurally":[280],"diverse":[281],"yet":[282],"exhibit":[283],"similarity.":[285],"advancements":[287],"hold":[288],"promise":[289],"reducing":[291],"costs":[293],"associated":[294],"development":[297],"RNA-targeted":[299],"drugs.":[300]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":13}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
