{"id":"https://openalex.org/W4396523381","doi":"https://doi.org/10.1109/jbhi.2024.3395446","title":"DNA-T: Deformable Neighborhood Attention Transformer for Irregular Medical Time Series","display_name":"DNA-T: Deformable Neighborhood Attention Transformer for Irregular Medical Time Series","publication_year":2024,"publication_date":"2024-04-30","ids":{"openalex":"https://openalex.org/W4396523381","doi":"https://doi.org/10.1109/jbhi.2024.3395446","pmid":"https://pubmed.ncbi.nlm.nih.gov/38954562"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2024.3395446","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3395446","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Jianxuan Huang","orcid":"https://orcid.org/0009-0003-2343-4020"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianxuan Huang","raw_affiliation_strings":["School of Computer Science, Guangdong University of Technology, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Guangdong University of Technology, Guangzhou, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015849144","display_name":"Baoyao Yang","orcid":"https://orcid.org/0000-0001-9092-3164"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Baoyao Yang","raw_affiliation_strings":["School of Computer Science, Guangdong University of Technology, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Guangdong University of Technology, Guangzhou, China","institution_ids":["https://openalex.org/I139024713"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012028880","display_name":"Kejing Yin","orcid":"https://orcid.org/0000-0003-4146-3338"},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Kejing Yin","raw_affiliation_strings":["Department of Computer Science, Hong Kong Baptist University, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hong Kong Baptist University, Hong Kong","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5114400795","display_name":"Jingwen Xu","orcid":"https://orcid.org/0000-0002-0696-7234"},"institutions":[{"id":"https://openalex.org/I139024713","display_name":"Guangdong University of Technology","ror":"https://ror.org/04azbjn80","country_code":"CN","type":"education","lineage":["https://openalex.org/I139024713"]},{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Jingwen Xu","raw_affiliation_strings":["Department of Computer Science, Hong Kong Baptist University, Hong Kong","School of Computer Science, Guangdong University of Technology, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hong Kong Baptist University, Hong Kong","institution_ids":["https://openalex.org/I141568987"]},{"raw_affiliation_string":"School of Computer Science, Guangdong University of Technology, Guangzhou, China","institution_ids":["https://openalex.org/I139024713"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I139024713"],"apc_list":null,"apc_paid":null,"fwci":4.4396,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.94972339,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"28","issue":"7","first_page":"4224","last_page":"4237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10775","display_name":"Generative Adversarial Networks and Image Synthesis","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6000780463218689},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.4487246870994568},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.43197986483573914},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4011165499687195},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.33603352308273315},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12090164422988892},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.10057273507118225}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6000780463218689},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.4487246870994568},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.43197986483573914},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4011165499687195},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.33603352308273315},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12090164422988892},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.10057273507118225},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2024.3395446","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2024.3395446","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:38954562","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38954562","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8399999737739563,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G13360203","display_name":null,"funder_award_id":"62102098","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3447165514","display_name":null,"funder_award_id":"2024A1515010186","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"},{"id":"https://openalex.org/G8779965524","display_name":null,"funder_award_id":"62302413","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W2396881363","https://openalex.org/W2481271618","https://openalex.org/W2601564443","https://openalex.org/W2625625371","https://openalex.org/W2742491462","https://openalex.org/W2772905286","https://openalex.org/W2896538705","https://openalex.org/W2911391468","https://openalex.org/W2962861647","https://openalex.org/W2963230407","https://openalex.org/W2963532813","https://openalex.org/W2964010366","https://openalex.org/W2964959375","https://openalex.org/W2997353686","https://openalex.org/W3034291999","https://openalex.org/W3049488374","https://openalex.org/W3080253043","https://openalex.org/W3092657637","https://openalex.org/W3104523752","https://openalex.org/W3138516171","https://openalex.org/W3166942762","https://openalex.org/W3176196442","https://openalex.org/W3177318507","https://openalex.org/W3179869055","https://openalex.org/W4229004636","https://openalex.org/W4283370926","https://openalex.org/W4297779827","https://openalex.org/W4306316985","https://openalex.org/W4381245616","https://openalex.org/W4382239440","https://openalex.org/W4385245566","https://openalex.org/W4386075553","https://openalex.org/W6640212811","https://openalex.org/W6718367848","https://openalex.org/W6739654316","https://openalex.org/W6749825310","https://openalex.org/W6759258263","https://openalex.org/W6762009602","https://openalex.org/W6764679822","https://openalex.org/W6767877913","https://openalex.org/W6768707575","https://openalex.org/W6771497439","https://openalex.org/W6778353478","https://openalex.org/W6780817209","https://openalex.org/W6784333009","https://openalex.org/W6784835917","https://openalex.org/W6792695861","https://openalex.org/W6796526935","https://openalex.org/W6797155008","https://openalex.org/W6802566335","https://openalex.org/W6805031497","https://openalex.org/W6846376059","https://openalex.org/W6850783765","https://openalex.org/W6861991748","https://openalex.org/W7019558294"],"related_works":["https://openalex.org/W2772917594","https://openalex.org/W2036807459","https://openalex.org/W2058170566","https://openalex.org/W2755342338","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398"],"abstract_inverted_index":{"The":[0,98,146],"real-world":[1],"Electronic":[2],"Health":[3],"Records":[4],"(EHRs)":[5],"present":[6],"irregularities":[7],"due":[8],"to":[9,72,133,135,152,174,196],"changes":[10,75,166],"in":[11,17,40,52,79,116,167,184],"the":[12,41,48,60,64,67,106,131,140,149,162,176,186,198,201],"patient's":[13],"health":[14],"status,":[15],"resulting":[16],"various":[18],"time":[19,45,96,118],"intervals":[20],"between":[21],"observations":[22],"and":[23,111,155],"different":[24],"physiological":[25],"variables":[26],"examined":[27],"at":[28],"each":[29],"observation":[30],"point.":[31],"There":[32],"have":[33],"been":[34],"recent":[35],"applications":[36],"of":[37,43,63,109,143,157,164,178,189,200],"Transformer-based":[38],"models":[39],"field":[42,108,142],"irregular":[44,94,117],"series.":[46,97,119],"However,":[47],"full":[49],"attention":[50,110],"mechanism":[51],"Transformer":[53,91],"overly":[54],"focuses":[55],"on":[56],"distant":[57],"information,":[58],"ignoring":[59],"short-term":[61,77],"correlations":[62],"condition.":[65],"Thereby,":[66],"model":[68],"is":[69],"not":[70],"able":[71],"capture":[73],"localized":[74,165],"or":[76],"fluctuations":[78],"patients'":[80,168],"conditions.":[81,169],"Therefore,":[82],"we":[83,121,192],"propose":[84],"a":[85,123],"novel":[86],"end-to-end":[87],"Deformable":[88,124],"Neighborhood":[89,125],"Attention":[90,126],"(DNA-T)":[92],"for":[93],"medical":[95],"DNA-T":[99],"captures":[100],"local":[101,153,158],"features":[102],"by":[103,138],"dynamically":[104],"adjusting":[105],"receptive":[107],"aggregating":[112],"relevant":[113,136],"deformable":[114],"neighborhoods":[115,137],"Specifically,":[120],"design":[122],"(DNA)":[127],"module":[128],"that":[129],"enables":[130],"network":[132],"attend":[134],"drifting":[139],"receiving":[141],"neighborhood":[144],"attention.":[145],"DNA":[147],"enhances":[148],"model's":[150],"sensitivity":[151],"information":[154],"representation":[156],"features,":[159],"thereby":[160],"capturing":[161],"correlation":[163],"We":[170],"conduct":[171],"extensive":[172],"experiments":[173],"validate":[175,197],"effectiveness":[177,199],"DNA-T,":[179],"outperforming":[180],"existing":[181],"state-of-the-art":[182],"methods":[183],"predicting":[185],"mortality":[187],"risk":[188],"patients.":[190],"Moreover,":[191],"visualize":[193],"an":[194],"example":[195],"proposed":[202],"DNA.":[203]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
