{"id":"https://openalex.org/W4390187230","doi":"https://doi.org/10.1109/jbhi.2023.3346821","title":"MAGCDA: A Multi-Hop Attention Graph Neural Networks Method for CircRNA-Disease Association Prediction","display_name":"MAGCDA: A Multi-Hop Attention Graph Neural Networks Method for CircRNA-Disease Association Prediction","publication_year":2023,"publication_date":"2023-12-25","ids":{"openalex":"https://openalex.org/W4390187230","doi":"https://doi.org/10.1109/jbhi.2023.3346821","pmid":"https://pubmed.ncbi.nlm.nih.gov/38145538"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2023.3346821","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3346821","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100436059","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-0184-307X"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]},{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","Guangxi Academy of Sciences, Nanning, China"],"raw_orcid":"https://orcid.org/0000-0003-0184-307X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"Guangxi Academy of Sciences, Nanning, China","institution_ids":["https://openalex.org/I4210165264"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100734156","display_name":"Zhengwei Li","orcid":"https://orcid.org/0000-0003-1644-1006"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]},{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng-Wei Li","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","School of Information Science and Engineering, Zaozhuang University, Zaozhuang, China"],"raw_orcid":"https://orcid.org/0000-0003-1644-1006","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Information Science and Engineering, Zaozhuang University, Zaozhuang, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["School of Computer Sciences, Northwestern Polytechnical University, Xi&#x0027;an, China"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"School of Computer Sciences, Northwestern Polytechnical University, Xi&#x0027;an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060381913","display_name":"De-Shuang Huang","orcid":"https://orcid.org/0000-0002-6759-2691"},"institutions":[{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"De-Shuang Huang","raw_affiliation_strings":["Guangxi Academy of Sciences, Nanning, China"],"raw_orcid":"https://orcid.org/0000-0002-6759-2691","affiliations":[{"raw_affiliation_string":"Guangxi Academy of Sciences, Nanning, China","institution_ids":["https://openalex.org/I4210165264"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101604712","display_name":"Leon Wong","orcid":"https://orcid.org/0000-0002-6864-991X"},"institutions":[{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Leon Wong","raw_affiliation_strings":["College of Big Data and Internet, Shenzhen Technology University, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-6864-991X","affiliations":[{"raw_affiliation_string":"College of Big Data and Internet, Shenzhen Technology University, Shenzhen, China","institution_ids":["https://openalex.org/I4210152380"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6967,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.84767773,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"28","issue":"3","first_page":"1752","last_page":"1761"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7169581055641174},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.47294163703918457},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4659833312034607},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4627644419670105},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4495866298675537},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4432346820831299},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4157825708389282},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39586105942726135},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2431933581829071},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11784100532531738}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7169581055641174},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.47294163703918457},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4659833312034607},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4627644419670105},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4495866298675537},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4432346820831299},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4157825708389282},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39586105942726135},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2431933581829071},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11784100532531738},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2023.3346821","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3346821","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:38145538","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38145538","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1966557314","https://openalex.org/W1967791012","https://openalex.org/W2029838682","https://openalex.org/W2031593782","https://openalex.org/W2058835062","https://openalex.org/W2141222510","https://openalex.org/W2159092541","https://openalex.org/W2511152819","https://openalex.org/W2744268790","https://openalex.org/W2792222116","https://openalex.org/W2800766678","https://openalex.org/W2802780709","https://openalex.org/W2807602500","https://openalex.org/W2884943532","https://openalex.org/W2913336364","https://openalex.org/W2951739649","https://openalex.org/W2965103063","https://openalex.org/W2980767508","https://openalex.org/W2991743543","https://openalex.org/W3020614442","https://openalex.org/W3025741173","https://openalex.org/W3026308742","https://openalex.org/W3084422379","https://openalex.org/W3085038881","https://openalex.org/W3117084002","https://openalex.org/W3128713460","https://openalex.org/W3135065548","https://openalex.org/W3157315991","https://openalex.org/W3174376470","https://openalex.org/W3179782236","https://openalex.org/W3189024187","https://openalex.org/W3205633532","https://openalex.org/W4210852391","https://openalex.org/W4213138800","https://openalex.org/W4226027283","https://openalex.org/W4232899299","https://openalex.org/W4281568005","https://openalex.org/W4282921951","https://openalex.org/W4292263641","https://openalex.org/W4294990936","https://openalex.org/W4296580708"],"related_works":["https://openalex.org/W3193043704","https://openalex.org/W4386259002","https://openalex.org/W1546989560","https://openalex.org/W3171520305","https://openalex.org/W3135126032","https://openalex.org/W1924178503","https://openalex.org/W4308716060","https://openalex.org/W4280648719","https://openalex.org/W4386937079","https://openalex.org/W4394984040"],"abstract_inverted_index":{"With":[0],"a":[1,18,77,93,104,209,219],"growing":[2],"body":[3],"of":[4,26,64,98,107,150,192],"evidence":[5],"establishing":[6],"circular":[7],"RNAs":[8],"(circRNAs)":[9],"are":[10],"widely":[11],"exploited":[12],"in":[13,21,163,167,178,189],"eukaryotic":[14],"cells":[15],"and":[16,24,39,100,124,129,154,166,174,198,217,225],"have":[17],"significant":[19],"contribution":[20],"the":[22,61,140,193],"occurrence":[23],"development":[25],"many":[27],"complex":[28,194],"human":[29],"diseases.":[30],"Disease-associated":[31],"circRNAs":[32,99,177,216],"can":[33,207],"serve":[34],"as":[35],"clinical":[36],"diagnostic":[37],"biomarkers":[38],"therapeutic":[40],"targets,":[41],"providing":[42],"novel":[43],"ideas":[44],"for":[45,52,183,222],"biopharmaceutical":[46],"research.":[47],"However,":[48],"available":[49],"computation":[50],"methods":[51],"predicting":[53],"circRNA-disease":[54],"associations":[55],"(CDAs)":[56],"do":[57],"not":[58],"sufficiently":[59],"consider":[60],"contextual":[62],"information":[63,115,123],"biological":[65],"network":[66,97],"nodes,":[67],"making":[68],"their":[69],"performance":[70],"limited.":[71],"In":[72,139],"this":[73],"work,":[74],"we":[75,90],"propose":[76],"multi-hop":[78,105],"attention":[79,117],"graph":[80,108],"neural":[81],"network-based":[82],"approach":[83],"MAGCDA":[84,146,157,184,206],"to":[85,110,134,212],"infer":[86,136],"potential":[87,137,176,214],"CDAs.":[88,138],"Specifically,":[89],"first":[91],"construct":[92],"multi-source":[94],"attribute":[95],"heterogeneous":[96],"diseases,":[101],"then":[102],"use":[103,131],"strategy":[106],"nodes":[109],"deeply":[111],"aggregate":[112],"node":[113],"context":[114],"through":[116],"diffusion,":[118],"thus":[119],"enhancing":[120],"topological":[121],"structure":[122],"mining":[125],"data":[126,144],"hidden":[127],"features,":[128],"finally":[130],"random":[132],"forest":[133],"accurately":[135],"four":[141],"gold":[142],"standard":[143],"sets,":[145],"achieved":[147],"prediction":[148,185],"accuracy":[149],"92.58%,":[151],"91.42%,":[152],"83.46%":[153],"91.12%,":[155],"respectively.":[156,201],"has":[158],"also":[159],"presented":[160],"prominent":[161],"achievements":[162],"ablation":[164],"experiments":[165],"comparisons":[168],"with":[169],"other":[170],"models.":[171],"Additionally,":[172],"18":[173],"17":[175],"top":[179],"20":[180],"predicted":[181],"scores":[182,186],"were":[187],"confirmed":[188],"case":[190],"studies":[191],"diseases":[195],"breast":[196],"cancer":[197],"Almozheimer's":[199],"disease,":[200],"These":[202],"results":[203],"suggest":[204],"that":[205],"be":[208],"practical":[210],"tool":[211],"explore":[213],"disease-associated":[215],"provide":[218],"theoretical":[220],"basis":[221],"disease":[223],"diagnosis":[224],"treatment.":[226]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
