{"id":"https://openalex.org/W4382998933","doi":"https://doi.org/10.1109/jbhi.2023.3289490","title":"CACO: A Core-Attachment Method With Cross-Species Functional Ortholog Information to Detect Human Protein Complexes","display_name":"CACO: A Core-Attachment Method With Cross-Species Functional Ortholog Information to Detect Human Protein Complexes","publication_year":2023,"publication_date":"2023-07-03","ids":{"openalex":"https://openalex.org/W4382998933","doi":"https://doi.org/10.1109/jbhi.2023.3289490","pmid":"https://pubmed.ncbi.nlm.nih.gov/37399160"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2023.3289490","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3289490","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101589261","display_name":"Wenkang Wang","orcid":"https://orcid.org/0009-0001-9930-5853"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenkang Wang","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077069371","display_name":"Xiangmao Meng","orcid":"https://orcid.org/0000-0002-7966-551X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangmao Meng","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-7966-551X","affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046328933","display_name":"Ju Xiang","orcid":"https://orcid.org/0000-0002-3045-5706"},"institutions":[{"id":"https://openalex.org/I56934997","display_name":"Changsha University of Science and Technology","ror":"https://ror.org/03yph8055","country_code":"CN","type":"education","lineage":["https://openalex.org/I56934997"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ju Xiang","raw_affiliation_strings":["School of Computer and Communication Engineering, Changsha University of Science and Technology, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-3045-5706","affiliations":[{"raw_affiliation_string":"School of Computer and Communication Engineering, Changsha University of Science and Technology, Changsha, China","institution_ids":["https://openalex.org/I56934997"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092389559","display_name":"Yunyan Shuai","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunyan Shuai","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016134532","display_name":"Hayat Dino Bedru","orcid":"https://orcid.org/0000-0002-3878-2197"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hayat Dino Bedru","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-3878-2197","affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-0188-1394","affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Hunan Provincial Engineering Research Center of Intelligent Computing in Biology and Medicine, Changsha, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101589261"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":1.1996,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.79043655,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"27","issue":"9","first_page":"4569","last_page":"4578"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5422995090484619},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5173606276512146},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.437760591506958},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4124155044555664},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40295159816741943},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3402074873447418},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18932485580444336}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5422995090484619},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5173606276512146},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.437760591506958},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4124155044555664},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40295159816741943},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3402074873447418},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18932485580444336},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2023.3289490","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3289490","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:37399160","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37399160","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3132070732","display_name":null,"funder_award_id":"2022ZZTS0736","funder_id":"https://openalex.org/F4320335880","funder_display_name":"Fundamental Research Funds for Central Universities of the Central South University"},{"id":"https://openalex.org/G4043378463","display_name":null,"funder_award_id":"61832019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7291385876","display_name":null,"funder_award_id":"2021M703633","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320335880","display_name":"Fundamental Research Funds for Central Universities of the Central South University","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1575542444","https://openalex.org/W1644749979","https://openalex.org/W1900937478","https://openalex.org/W1973508741","https://openalex.org/W1984789788","https://openalex.org/W1986214964","https://openalex.org/W1998490996","https://openalex.org/W2000693703","https://openalex.org/W2006402375","https://openalex.org/W2043764521","https://openalex.org/W2045204781","https://openalex.org/W2046831513","https://openalex.org/W2050721857","https://openalex.org/W2057311550","https://openalex.org/W2067163733","https://openalex.org/W2071469133","https://openalex.org/W2074490119","https://openalex.org/W2076710572","https://openalex.org/W2082565035","https://openalex.org/W2090422756","https://openalex.org/W2110336366","https://openalex.org/W2110708857","https://openalex.org/W2117757462","https://openalex.org/W2122863289","https://openalex.org/W2124166542","https://openalex.org/W2125179362","https://openalex.org/W2130687290","https://openalex.org/W2136850043","https://openalex.org/W2140280811","https://openalex.org/W2140412523","https://openalex.org/W2141682941","https://openalex.org/W2142082526","https://openalex.org/W2152687832","https://openalex.org/W2153929049","https://openalex.org/W2159710443","https://openalex.org/W2160313295","https://openalex.org/W2160449408","https://openalex.org/W2161973008","https://openalex.org/W2165533101","https://openalex.org/W2465613542","https://openalex.org/W2552212095","https://openalex.org/W2581439210","https://openalex.org/W2793316497","https://openalex.org/W2900569176","https://openalex.org/W2917858269","https://openalex.org/W2939191975","https://openalex.org/W2952556895","https://openalex.org/W2965851497","https://openalex.org/W2973129733","https://openalex.org/W2988396470","https://openalex.org/W3007888226","https://openalex.org/W3112376646","https://openalex.org/W3116125956","https://openalex.org/W3120506419","https://openalex.org/W3121027314","https://openalex.org/W3141892660","https://openalex.org/W3143063265","https://openalex.org/W3179436811","https://openalex.org/W3212975273","https://openalex.org/W3216520818","https://openalex.org/W4206031577","https://openalex.org/W4225096104","https://openalex.org/W4243979784","https://openalex.org/W4298144280","https://openalex.org/W4315620715","https://openalex.org/W6749732038"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2099982459","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W3192210502","https://openalex.org/W1981737222","https://openalex.org/W1569394480","https://openalex.org/W4390876228","https://openalex.org/W1998222399"],"abstract_inverted_index":{"Protein":[0],"complexes":[1,11,145],"play":[2],"an":[3],"essential":[4],"role":[5],"in":[6,60,162,181],"living":[7],"cells.":[8],"Detecting":[9],"protein":[10,16,40,75,86,144,183],"is":[12,118,132,140],"crucial":[13],"to":[14,23,38,72,107,120,142,152],"understand":[15],"functions":[17],"and":[18,26,97,125,166,174],"treat":[19],"complex":[20],"diseases.":[21],"Due":[22],"high":[24],"time":[25],"resource":[27],"consumption":[28],"of":[29,44,111,160,164],"experiment":[30],"approaches,":[31],"many":[32],"computational":[33],"approaches":[34],"have":[35],"been":[36],"proposed":[37,141,176],"detect":[39,73,143],"complexes.":[41,184],"However,":[42],"most":[43],"them":[45,161],"are":[46,179],"only":[47],"based":[48],"on":[49],"protein-protein":[50],"interaction":[51],"(PPI)":[52],"networks,":[53],"which":[54],"heavily":[55],"suffer":[56],"from":[57,82,101,146],"the":[58,79,109,122,147,175],"noise":[59],"PPI":[61,115,123,130,149],"networks.":[62],"Therefore,":[63],"we":[64],"propose":[65],"a":[66,92,105,114,127,135],"novel":[67],"core-attachment":[68,138,177],"method,":[69],"named":[70],"CACO,":[71],"human":[74],"complexes,":[76],"by":[77],"integrating":[78,171],"functional":[80],"information":[81,173],"other":[83,102,153],"species":[84,103],"via":[85],"ortholog":[87,94,172],"relations.":[88],"First,":[89],"CACO":[90,157],"constructs":[91],"cross-species":[93],"relation":[95],"matrix":[96],"transfers":[98],"GO":[99],"terms":[100,163],"as":[104],"reference":[106],"evaluate":[108],"confidence":[110],"PPIs.":[112],"Then,":[113],"filter":[116],"strategy":[117],"adopted":[119],"clean":[121,129],"network":[124,131],"thus":[126],"weighted":[128,148],"constructed.":[133],"Finally,":[134],"new":[136],"effective":[137,180],"algorithm":[139,178],"network.":[150],"Compared":[151],"thirteen":[154],"state-of-the-art":[155],"methods,":[156],"outperforms":[158],"all":[159],"F-measure":[165],"Composite":[167],"Score,":[168],"showing":[169],"that":[170],"detecting":[182]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
