{"id":"https://openalex.org/W4376133364","doi":"https://doi.org/10.1109/jbhi.2023.3272154","title":"MSGCA: Drug-Disease Associations Prediction Based on Multi-Similarities Graph Convolutional Autoencoder","display_name":"MSGCA: Drug-Disease Associations Prediction Based on Multi-Similarities Graph Convolutional Autoencoder","publication_year":2023,"publication_date":"2023-05-11","ids":{"openalex":"https://openalex.org/W4376133364","doi":"https://doi.org/10.1109/jbhi.2023.3272154","pmid":"https://pubmed.ncbi.nlm.nih.gov/37163398"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2023.3272154","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3272154","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100347168","display_name":"Ying Wang","orcid":"https://orcid.org/0000-0002-8710-515X"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Wang","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0002-8710-515X","affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026569643","display_name":"Ying-Lian Gao","orcid":"https://orcid.org/0000-0003-0483-5622"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying-Lian Gao","raw_affiliation_strings":["Qufu Normal University Library, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0003-0483-5622","affiliations":[{"raw_affiliation_string":"Qufu Normal University Library, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100347490","display_name":"Juan Wang","orcid":"https://orcid.org/0000-0003-3934-0435"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Wang","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0003-3934-0435","affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100448913","display_name":"Feng Li","orcid":"https://orcid.org/0000-0002-5556-3789"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Li","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0002-5556-3789","affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073144090","display_name":"Jin\u2010Xing Liu","orcid":"https://orcid.org/0000-0001-6104-2149"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":"https://orcid.org/0000-0001-6104-2149","affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I202126657"],"apc_list":{"value":2345,"currency":"USD","value_usd":2345},"apc_paid":null,"fwci":2.0921,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.89020234,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"27","issue":"7","first_page":"3686","last_page":"3694"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9710000157356262,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9000999927520752,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7620623111724854},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5467941761016846},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.515915036201477},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.4582059383392334},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.45366743206977844},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3692193627357483},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.2889069616794586},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.16000297665596008},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10294538736343384}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7620623111724854},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5467941761016846},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.515915036201477},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.4582059383392334},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.45366743206977844},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3692193627357483},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2889069616794586},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.16000297665596008},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10294538736343384},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2023.3272154","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3272154","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:37163398","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37163398","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G1350247206","display_name":null,"funder_award_id":"62172254","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1659441718","display_name":null,"funder_award_id":"62172253","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W2068336157","https://openalex.org/W2105939331","https://openalex.org/W2113072832","https://openalex.org/W2128049108","https://openalex.org/W2148797284","https://openalex.org/W2154654747","https://openalex.org/W2166550586","https://openalex.org/W2346950316","https://openalex.org/W2579434750","https://openalex.org/W2767891136","https://openalex.org/W2770663710","https://openalex.org/W2771545712","https://openalex.org/W2790385355","https://openalex.org/W2896605526","https://openalex.org/W2904742480","https://openalex.org/W2946099214","https://openalex.org/W2950473735","https://openalex.org/W2961050676","https://openalex.org/W2965717703","https://openalex.org/W2966349991","https://openalex.org/W3000082418","https://openalex.org/W3000600836","https://openalex.org/W3003038853","https://openalex.org/W3004260451","https://openalex.org/W3022121690","https://openalex.org/W3027579288","https://openalex.org/W3042289107","https://openalex.org/W3093030756","https://openalex.org/W3093194543","https://openalex.org/W3097857367","https://openalex.org/W3113654230","https://openalex.org/W3116278528","https://openalex.org/W3125008742","https://openalex.org/W3174290590","https://openalex.org/W3179782236","https://openalex.org/W3192134500","https://openalex.org/W3193511962","https://openalex.org/W3195262567","https://openalex.org/W3199401237","https://openalex.org/W3201862100","https://openalex.org/W3211042394","https://openalex.org/W3214305858","https://openalex.org/W3215531133","https://openalex.org/W4200043717","https://openalex.org/W4200140951","https://openalex.org/W4200424115","https://openalex.org/W4206547282","https://openalex.org/W4220904934","https://openalex.org/W4226276166","https://openalex.org/W4248234957","https://openalex.org/W4281685099","https://openalex.org/W4292263641","https://openalex.org/W4294990936"],"related_works":["https://openalex.org/W4220775285","https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"Identifying":[0],"drug-disease":[1],"associations":[2],"(DDAs)":[3],"is":[4,22,49,68,116,149],"critical":[5],"to":[6,13,24,91,151],"the":[7,45,54,101,113,125,129,142,170],"development":[8],"of":[9,172],"drugs.":[10],"Traditional":[11],"methods":[12,30,38],"determine":[14],"DDAs":[15,32,36,41,47,71,114,127],"are":[16,107,135],"expensive":[17],"and":[18,28,79,96,104,112,128,132],"inefficient.":[19],"Therefore,":[20],"it":[21],"imperative":[23],"develop":[25],"more":[26],"accurate":[27],"effective":[29],"for":[31,70],"prediction.":[33,72],"Most":[34],"current":[35],"prediction":[37,55,59],"utilize":[39],"original":[40,46],"matrix":[42,48,115],"directly.":[43],"However,":[44],"sparse,":[50],"which":[51],"greatly":[52],"affects":[53],"consequences.":[56],"Hence,":[57],"a":[58,138],"method":[60],"based":[61],"on":[62,162],"multi-similarities":[63],"graph":[64,143],"convolutional":[65,144],"autoencoder":[66,145],"(MSGCA)":[67],"proposed":[69],"First,":[73],"MSGCA":[74,158],"integrates":[75],"multiple":[76,86],"drug":[77,94,103,131],"similarities":[78,81,106,134],"disease":[80,97,105,133],"using":[82],"centered":[83],"kernel":[84,87],"alignment-based":[85],"learning":[88],"(CKA-MKL)":[89],"algorithm":[90],"form":[92],"new":[93,102],"similarity":[95],"similarity,":[98],"respectively.":[99],"Second,":[100],"improved":[108,130],"by":[109,118],"linear":[110],"neighborhood,":[111],"reconstructed":[117,126],"weighted":[119],"K":[120],"nearest":[121],"neighbor":[122],"profiles.":[123],"Next,":[124],"integrated":[136],"into":[137],"heterogeneous":[139],"network.":[140],"Finally,":[141],"with":[146,155],"attention":[147],"mechanism":[148],"utilized":[150],"predict":[152],"DDAs.":[153],"Compared":[154],"extant":[156],"methods,":[157],"shows":[159],"superior":[160],"results":[161],"three":[163],"datasets.":[164],"Furthermore,":[165],"case":[166],"studies":[167],"further":[168],"demonstrate":[169],"reliability":[171],"MSGCA.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
