{"id":"https://openalex.org/W4360994011","doi":"https://doi.org/10.1109/jbhi.2023.3261319","title":"An Effective Model for Predicting Phage-Host Interactions Via Graph Embedding Representation Learning With Multi-Head Attention Mechanism","display_name":"An Effective Model for Predicting Phage-Host Interactions Via Graph Embedding Representation Learning With Multi-Head Attention Mechanism","publication_year":2023,"publication_date":"2023-03-27","ids":{"openalex":"https://openalex.org/W4360994011","doi":"https://doi.org/10.1109/jbhi.2023.3261319","pmid":"https://pubmed.ncbi.nlm.nih.gov/37030796"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2023.3261319","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3261319","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101942209","display_name":"Yue Wang","orcid":"https://orcid.org/0000-0002-5320-8994"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Wang","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0002-5320-8994","affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045344688","display_name":"Han Sun","orcid":"https://orcid.org/0000-0003-0986-959X"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Sun","raw_affiliation_strings":["School of Mathematics and Statistics, Central China Normal University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0003-0986-959X","affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100769723","display_name":"Haodong Wang","orcid":"https://orcid.org/0009-0004-7034-8499"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haodong Wang","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China"],"raw_orcid":"https://orcid.org/0009-0004-7034-8499","affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100601959","display_name":"Dandan Li","orcid":"https://orcid.org/0009-0003-6132-8931"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dandan Li","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China"],"raw_orcid":"https://orcid.org/0009-0003-6132-8931","affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079405950","display_name":"Weizhong Zhao","orcid":"https://orcid.org/0000-0001-8552-6084"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weizhong Zhao","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0001-8552-6084","affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003550654","display_name":"Xingpeng Jiang","orcid":"https://orcid.org/0000-0002-8848-9300"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingpeng Jiang","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101496385","display_name":"Xianjun Shen","orcid":"https://orcid.org/0000-0001-5714-8848"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianjun Shen","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0001-5714-8848","affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring and Research Center for Network Media, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I40963666"],"apc_list":null,"apc_paid":null,"fwci":2.7766,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.89510524,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"6","first_page":"3061","last_page":"3071"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5605324506759644},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5153235793113708},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49741795659065247},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47278356552124023},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.4400314390659332},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.41704216599464417},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3973897099494934},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18012791872024536}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5605324506759644},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5153235793113708},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49741795659065247},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47278356552124023},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.4400314390659332},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.41704216599464417},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3973897099494934},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18012791872024536}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2023.3261319","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3261319","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:37030796","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37030796","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1307575636","display_name":"\u9762\u5411\u8111\u75be\u75c5\u7684\u4eba\u4f53\u80a0\u9053\u5fae\u751f\u7269\u7ec4\u5b66\u6570\u636e\u6316\u6398\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W112013909","https://openalex.org/W1522301498","https://openalex.org/W1534696813","https://openalex.org/W1557689461","https://openalex.org/W1565492579","https://openalex.org/W1904365287","https://openalex.org/W1968363797","https://openalex.org/W1987219048","https://openalex.org/W2058362335","https://openalex.org/W2095069415","https://openalex.org/W2106029302","https://openalex.org/W2113000293","https://openalex.org/W2123688186","https://openalex.org/W2145792706","https://openalex.org/W2161060487","https://openalex.org/W2245444176","https://openalex.org/W2291003811","https://openalex.org/W2486285194","https://openalex.org/W2559100382","https://openalex.org/W2616654950","https://openalex.org/W2769959144","https://openalex.org/W2772087126","https://openalex.org/W2913095190","https://openalex.org/W2987825948","https://openalex.org/W2990632561","https://openalex.org/W2993937564","https://openalex.org/W3000082418","https://openalex.org/W3037496568","https://openalex.org/W3045879648","https://openalex.org/W3051688178","https://openalex.org/W3093856986","https://openalex.org/W3118981004","https://openalex.org/W3135792231","https://openalex.org/W3136759802","https://openalex.org/W3183998990","https://openalex.org/W3196522895","https://openalex.org/W3200765011","https://openalex.org/W4285723986","https://openalex.org/W6631190155","https://openalex.org/W6640036494","https://openalex.org/W6745537798","https://openalex.org/W6798186086"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"In":[0,137,216],"the":[1,59,96,106,115,139,159,195,209],"treatment":[2],"of":[3,8,22,76,100,148,155,172,181,200,219],"bacterial":[4,15,55],"infectious":[5,56],"diseases,":[6],"overuse":[7],"antibiotics":[9,18],"may":[10],"lead":[11],"to":[12,17,53,65,93,145,178,193],"not":[13],"only":[14],"resistance":[16],"but":[19],"also":[20],"dysbiosis":[21],"beneficial":[23,46],"bacteria":[24,43,77],"which":[25,37,186],"are":[26,244],"essential":[27],"for":[28,86,124,222],"maintaining":[29],"normal":[30],"human":[31,225],"life":[32],"activities.":[33],"Instead,":[34],"phage":[35,61],"therapy,":[36,62],"invades":[38],"and":[39,50,78,98,150,161,183,237],"lyses":[40],"specific":[41],"pathogenic":[42],"without":[44],"affecting":[45],"bacteria,":[47,184],"becomes":[48],"more":[49,51],"popular":[52],"treat":[54],"diseases.":[57],"For":[58],"effective":[60,120],"it":[63],"requires":[64],"accurately":[66],"predict":[67,231],"potential":[68,239],"phage-host":[69,88,101,110,156,164,196,213],"interactions":[70,111,214],"from":[71,152],"heterogeneous":[72,102,165],"information":[73,103,166],"network":[74],"consisting":[75],"phages.":[79],"Although":[80],"many":[81],"models":[82],"have":[83],"been":[84],"proposed":[85],"predicting":[87,125],"interactions,":[89],"most":[90],"methods":[91,211],"fail":[92],"consider":[94],"fully":[95],"sparsity":[97,160],"unconnectedness":[99,162],"network,":[104],"deriving":[105],"undesirable":[107],"performance":[108],"on":[109,185,212],"prediction.":[112,215],"To":[113],"address":[114],"challenge,":[116],"we":[117],"propose":[118],"an":[119],"model":[121],"called":[122],"GERMAN-PHI":[123,205,229],"Phage-Host":[126],"Interactions":[127],"via":[128],"Graph":[129],"Embedding":[130],"Representation":[131],"learning":[132],"with":[133,174,234],"Multi-head":[134],"Attention":[135],"mechaNism.":[136],"GERMAN-PHI,":[138],"multi-head":[140],"attention":[141],"mechanism":[142],"is":[143,176,191],"utilized":[144],"learn":[146,179],"representations":[147,180],"phages":[149,182,233,243],"hosts":[151],"multiple":[153],"perspectives":[154],"associations,":[157],"addressing":[158],"in":[163],"network.":[167],"More":[168],"specifically,":[169],"a":[170],"module":[171],"GAT":[173],"talking-heads":[175],"employed":[177],"neural":[187],"induction":[188],"matrix":[189],"completion":[190],"conducted":[192],"reconstruct":[194],"association":[197],"matrix.":[198],"Results":[199],"comprehensive":[201],"experiments":[202],"demonstrate":[203],"that":[204,228],"performs":[206],"better":[207],"than":[208],"state-of-the-art":[210],"addition,":[217],"results":[218],"case":[220],"study":[221],"two":[223],"high-risk":[224],"pathogens":[226],"show":[227],"can":[230],"validated":[232],"high":[235],"accuracy,":[236],"some":[238],"or":[240],"new":[241],"associated":[242],"provided":[245],"as":[246],"well.":[247]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
