{"id":"https://openalex.org/W4321483900","doi":"https://doi.org/10.1109/jbhi.2023.3247805","title":"LncDLSM: Identification of Long Non-Coding RNAs With Deep Learning-Based Sequence Model","display_name":"LncDLSM: Identification of Long Non-Coding RNAs With Deep Learning-Based Sequence Model","publication_year":2023,"publication_date":"2023-02-22","ids":{"openalex":"https://openalex.org/W4321483900","doi":"https://doi.org/10.1109/jbhi.2023.3247805","pmid":"https://pubmed.ncbi.nlm.nih.gov/37027676"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2023.3247805","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3247805","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101799174","display_name":"Ying Wang","orcid":"https://orcid.org/0009-0006-8959-8345"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ying Wang","raw_affiliation_strings":["School of Automation Science and Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, Shannxi, China"],"affiliations":[{"raw_affiliation_string":"School of Automation Science and Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, Shannxi, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100627236","display_name":"Pengfei Zhao","orcid":"https://orcid.org/0000-0001-6419-6653"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengfei Zhao","raw_affiliation_strings":["School of Automation Science and Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, Shannxi, China"],"affiliations":[{"raw_affiliation_string":"School of Automation Science and Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, Shannxi, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053993162","display_name":"Hongkai Du","orcid":null},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongkai Du","raw_affiliation_strings":["School of Software Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, Shannxi, China"],"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, Shannxi, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032238772","display_name":"Yingxin Cao","orcid":"https://orcid.org/0000-0002-2769-9056"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yingxin Cao","raw_affiliation_strings":["Department of Computer Science, University of California, Irvine, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074144985","display_name":"Qinke Peng","orcid":"https://orcid.org/0000-0002-5448-8529"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinke Peng","raw_affiliation_strings":["School of Automation Science and Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, Shannxi, China"],"affiliations":[{"raw_affiliation_string":"School of Automation Science and Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, Shannxi, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062656355","display_name":"Laiyi Fu","orcid":"https://orcid.org/0000-0001-9086-3982"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Laiyi Fu","raw_affiliation_strings":["School of Automation Science and Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, China","Sichuan Digital Economy Industry Development Research Institute, Chengdu, China","Research Institute of Xi'an Jiaotong University, Zhejiang, China"],"affiliations":[{"raw_affiliation_string":"School of Automation Science and Engineering, Xi&#x0027;an Jiaotong University, Xi&#x0027;an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Sichuan Digital Economy Industry Development Research Institute, Chengdu, China","institution_ids":[]},{"raw_affiliation_string":"Research Institute of Xi'an Jiaotong University, Zhejiang, China","institution_ids":["https://openalex.org/I87445476"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101799174"],"corresponding_institution_ids":["https://openalex.org/I87445476"],"apc_list":null,"apc_paid":null,"fwci":2.2237,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.87604438,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"27","issue":"4","first_page":"2117","last_page":"2127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7269883155822754},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.6038305163383484},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5485020279884338},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5205108523368835},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.516179621219635},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4476979672908783},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44184941053390503},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.43721821904182434},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21097341179847717}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7269883155822754},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.6038305163383484},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5485020279884338},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5205108523368835},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.516179621219635},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4476979672908783},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44184941053390503},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.43721821904182434},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21097341179847717},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2023.3247805","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3247805","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:37027676","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37027676","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G996507653","display_name":null,"funder_award_id":"61872288","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1482244404","https://openalex.org/W1963604994","https://openalex.org/W1974595249","https://openalex.org/W1978967539","https://openalex.org/W1986234964","https://openalex.org/W1998422171","https://openalex.org/W2008616402","https://openalex.org/W2009556149","https://openalex.org/W2024920865","https://openalex.org/W2029872802","https://openalex.org/W2036242736","https://openalex.org/W2048194168","https://openalex.org/W2052503008","https://openalex.org/W2058581494","https://openalex.org/W2075320162","https://openalex.org/W2081530255","https://openalex.org/W2105349784","https://openalex.org/W2118023394","https://openalex.org/W2134597218","https://openalex.org/W2135120651","https://openalex.org/W2137499975","https://openalex.org/W2139658526","https://openalex.org/W2155273149","https://openalex.org/W2156270929","https://openalex.org/W2157009395","https://openalex.org/W2158135353","https://openalex.org/W2169663192","https://openalex.org/W2170747616","https://openalex.org/W2173732482","https://openalex.org/W2183341477","https://openalex.org/W2187089797","https://openalex.org/W2214409633","https://openalex.org/W2401640772","https://openalex.org/W2587669339","https://openalex.org/W2615786037","https://openalex.org/W2767918570","https://openalex.org/W2805098952","https://openalex.org/W2805813857","https://openalex.org/W2890528557","https://openalex.org/W2897227202","https://openalex.org/W2931907640","https://openalex.org/W2951413354","https://openalex.org/W2962858109","https://openalex.org/W2963351448","https://openalex.org/W2965851497","https://openalex.org/W2968352143","https://openalex.org/W2999743161","https://openalex.org/W4206247747","https://openalex.org/W6684866392"],"related_works":["https://openalex.org/W4312200629","https://openalex.org/W4382286161","https://openalex.org/W4318957922","https://openalex.org/W2960456850","https://openalex.org/W2946016983","https://openalex.org/W4380611590","https://openalex.org/W4318834068","https://openalex.org/W4317565044","https://openalex.org/W3021430260","https://openalex.org/W4312685930"],"abstract_inverted_index":{"Long":[0],"non-coding":[1],"RNAs":[2],"(LncRNAs)":[3],"serve":[4],"a":[5,85,103],"vital":[6],"role":[7],"in":[8,79],"regulating":[9],"gene":[10],"expressions":[11],"and":[12,31,50,64,117,145],"other":[13,92,111,122],"biological":[14,59,99,112],"processes.":[15],"Differentiation":[16],"of":[17,28,58],"lncRNAs":[18,108],"from":[19,91],"protein-coding":[20,93],"transcripts":[21,94],"helps":[22],"researchers":[23],"dig":[24],"into":[25],"the":[26,55,143,146],"mechanism":[27],"lncRNA":[29,71,90],"formation":[30],"its":[32],"downstream":[33],"regulations":[34],"related":[35],"to":[36,44,121,142],"various":[37],"diseases.":[38],"Previous":[39],"works":[40],"have":[41],"been":[42],"proposed":[43],"identify":[45],"lncRNAs,":[46],"including":[47],"traditional":[48],"bio-sequencing":[49,68],"machine":[51,114],"learning":[52,115,126],"approaches.":[53],"Considering":[54],"tedious":[56],"work":[57],"characteristic-based":[60],"feature":[61],"extraction":[62],"procedures":[63],"inevitable":[65],"artifacts":[66],"during":[67],"processes,":[69],"those":[70],"detection":[72],"methods":[73,116],"are":[74],"not":[75],"always":[76],"satisfactory.":[77],"Hence,":[78],"this":[80],"work,":[81],"we":[82],"presented":[83],"lncDLSM,":[84],"deep":[86],"learning-based":[87],"framework":[88],"differentiating":[89],"without":[95],"dependencies":[96],"on":[97],"prior":[98],"knowledge.":[100],"lncDLSM":[101],"is":[102],"helpful":[104],"tool":[105],"for":[106],"identifying":[107],"compared":[109],"with":[110],"feature-based":[113],"can":[118],"be":[119],"applied":[120],"species":[123,135],"by":[124],"transfer":[125],"achieving":[127],"satisfactory":[128],"results.":[129],"Further":[130],"experiments":[131],"showed":[132],"that":[133],"different":[134],"display":[136],"distinct":[137],"boundaries":[138],"among":[139,148],"distributions":[140],"corresponding":[141],"homology":[144],"specificity":[147],"species,":[149],"respectively.":[150]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
