{"id":"https://openalex.org/W4320018401","doi":"https://doi.org/10.1109/jbhi.2023.3244044","title":"TaughtNet: Learning Multi-Task Biomedical Named Entity Recognition From Single-Task Teachers","display_name":"TaughtNet: Learning Multi-Task Biomedical Named Entity Recognition From Single-Task Teachers","publication_year":2023,"publication_date":"2023-02-10","ids":{"openalex":"https://openalex.org/W4320018401","doi":"https://doi.org/10.1109/jbhi.2023.3244044","pmid":"https://pubmed.ncbi.nlm.nih.gov/37022917"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2023.3244044","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3244044","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/6363502/10041925.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/6221020/6363502/10041925.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081965427","display_name":"Vincenzo Moscato","orcid":"https://orcid.org/0000-0002-0754-7696"},"institutions":[{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Vincenzo Moscato","raw_affiliation_strings":["Department of Electrical and Information Technology, University of Naples Federico II, Naples, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Information Technology, University of Naples Federico II, Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022700280","display_name":"Marco Postiglione","orcid":"https://orcid.org/0000-0003-1470-8053"},"institutions":[{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Postiglione","raw_affiliation_strings":["Department of Electrical and Information Technology, University of Naples Federico II, Naples, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Information Technology, University of Naples Federico II, Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090709130","display_name":"Carlo Sansone","orcid":"https://orcid.org/0000-0002-8176-6950"},"institutions":[{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carlo Sansone","raw_affiliation_strings":["Department of Electrical and Information Technology, University of Naples Federico II, Naples, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Information Technology, University of Naples Federico II, Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080190737","display_name":"Giancarlo Sperl\u00ed","orcid":"https://orcid.org/0000-0003-4033-3777"},"institutions":[{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giancarlo Sperl\u00ed","raw_affiliation_strings":["Department of Electrical and Information Technology, University of Naples Federico II, Naples, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Information Technology, University of Naples Federico II, Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5081965427"],"corresponding_institution_ids":["https://openalex.org/I71267560"],"apc_list":null,"apc_paid":null,"fwci":1.9202,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.88187677,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"27","issue":"5","first_page":"2512","last_page":"2523"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8608406782150269},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7545435428619385},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6540048718452454},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.6026801466941833},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5285567045211792},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5099347829818726},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5042790174484253},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.48395517468452454},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.46523991227149963},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4559131860733032},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.44912245869636536},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.4415159225463867},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.4256070852279663},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4166424870491028},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35943683981895447},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.282891184091568}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8608406782150269},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7545435428619385},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6540048718452454},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.6026801466941833},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5285567045211792},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5099347829818726},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5042790174484253},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.48395517468452454},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.46523991227149963},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4559131860733032},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.44912245869636536},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.4415159225463867},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.4256070852279663},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4166424870491028},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35943683981895447},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.282891184091568},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2023.3244044","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3244044","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/6363502/10041925.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:37022917","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37022917","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1109/jbhi.2023.3244044","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2023.3244044","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/6363502/10041925.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309590","display_name":"Universit\u00e0 degli Studi di Napoli Federico II","ror":"https://ror.org/05290cv24"},{"id":"https://openalex.org/F4320335813","display_name":"Innovation and Networks Executive Agency","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4320018401.pdf","grobid_xml":"https://content.openalex.org/works/W4320018401.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1747861911","https://openalex.org/W1821462560","https://openalex.org/W1965555277","https://openalex.org/W2008830554","https://openalex.org/W2068882115","https://openalex.org/W2154142897","https://openalex.org/W2158873310","https://openalex.org/W2169099542","https://openalex.org/W2296283641","https://openalex.org/W2346452181","https://openalex.org/W2508418541","https://openalex.org/W2594633041","https://openalex.org/W2734608416","https://openalex.org/W2735585131","https://openalex.org/W2743028754","https://openalex.org/W2747909401","https://openalex.org/W2890830728","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2925863688","https://openalex.org/W2937845937","https://openalex.org/W2952650870","https://openalex.org/W2962739339","https://openalex.org/W2962902328","https://openalex.org/W2963339489","https://openalex.org/W2963350559","https://openalex.org/W2963442256","https://openalex.org/W2963558486","https://openalex.org/W2963625095","https://openalex.org/W2963736842","https://openalex.org/W2970454332","https://openalex.org/W2970597249","https://openalex.org/W2970771982","https://openalex.org/W2978017171","https://openalex.org/W2979826702","https://openalex.org/W3002832564","https://openalex.org/W3008374555","https://openalex.org/W3034238904","https://openalex.org/W3034457371","https://openalex.org/W3035317912","https://openalex.org/W3035321115","https://openalex.org/W3045672834","https://openalex.org/W3100452049","https://openalex.org/W3100806282","https://openalex.org/W3105966348","https://openalex.org/W4239943352","https://openalex.org/W4292779060","https://openalex.org/W4298858094","https://openalex.org/W6637694737","https://openalex.org/W6638523607","https://openalex.org/W6683263410","https://openalex.org/W6734194636","https://openalex.org/W6755207826","https://openalex.org/W6757249106","https://openalex.org/W6761260114","https://openalex.org/W6761672038","https://openalex.org/W6763701032","https://openalex.org/W6767733985","https://openalex.org/W6768851824","https://openalex.org/W6773368733","https://openalex.org/W6773815586","https://openalex.org/W6778883912"],"related_works":["https://openalex.org/W2186562580","https://openalex.org/W3198729192","https://openalex.org/W3000685722","https://openalex.org/W4255258373","https://openalex.org/W2593907245","https://openalex.org/W2520117834","https://openalex.org/W2883921205","https://openalex.org/W4313162113","https://openalex.org/W2757016069","https://openalex.org/W3216421539"],"abstract_inverted_index":{"In":[0,99],"Biomedical":[1],"Named":[2],"Entity":[3],"Recognition":[4],"(BioNER),":[5],"the":[6,27,35,49,78,90,121,125,133,144,219],"use":[7],"of":[8,29,51,66,80,127,135,137,148,157],"current":[9,52],"cutting-edge":[10],"deep":[11,16],"learning-based":[12],"methods,":[13],"such":[14],"as":[15],"bidirectional":[17],"transformers":[18],"(e.g.":[19],"BERT,":[20],"GPT-3),":[21],"can":[22],"be":[23,71,176,179,188],"substantially":[24],"hampered":[25],"by":[26,118],"absence":[28],"publicly":[30,53,207],"accessible":[31],"annotated":[32,72],"datasets.":[33],"When":[34],"BioNER":[36],"system":[37],"is":[38],"required":[39],"to":[40,93,111,167,178,187,203],"annotate":[41],"multiple":[42],"entity":[43,61],"types,":[44],"various":[45],"challenges":[46],"arise":[47],"because":[48],"majority":[50],"available":[54],"datasets":[55,92],"contain":[56],"annotations":[57],"for":[58,63],"just":[59],"one":[60],"type:":[62],"example,":[64],"mentions":[65,136],"disease":[67],"entities":[68],"may":[69,175],"not":[70],"in":[73,77,83,155,181],"a":[74,84,95,105,113,200],"dataset":[75],"specialized":[76],"recognition":[79,134],"drugs,":[81],"resulting":[82],"poor":[85],"ground":[86,122],"truth":[87,123],"when":[88],"using":[89],"two":[91],"train":[94,168],"single":[96,114],"multi-task":[97,115,216],"model.":[98],"this":[100],"work,":[101],"we":[102],"propose":[103],"TaughtNet,":[104],"knowledge":[106,126],"distillation-based":[107],"framework":[108],"allowing":[109],"us":[110,166],"fine-tune":[112],"student":[116,172],"model":[117,217],"leveraging":[119],"both":[120,209],"and":[124,141,146,160,170,194,198,214],"single-task":[128],"teachers.":[129],"Our":[130],"experiments":[131],"on":[132,190,212,218],"diseases,":[138],"chemical":[139],"compounds":[140],"genes":[142],"show":[143],"appropriateness":[145],"relevance":[147],"our":[149,210,215],"approach":[150],"w.r.t.":[151],"strong":[152],"state-of-the-art":[153],"baselines":[154],"terms":[156],"precision,":[158],"recall":[159],"F1":[161],"scores.":[162],"Moreover,":[163],"TaughtNet":[164],"allows":[165],"smaller":[169],"lighter":[171],"models,":[173],"which":[174],"easier":[177],"used":[180],"real-world":[182],"scenarios,":[183],"where":[184],"they":[185],"have":[186],"deployed":[189],"limited-memory":[191],"hardware":[192],"devices":[193],"guarantee":[195],"fast":[196],"inferences,":[197],"shows":[199],"high":[201],"potential":[202],"provide":[204],"explainability.":[205],"We":[206],"release":[208],"code":[211],"github<sup>1</sup>":[213],"huggingface":[220],"repository.<sup>2</sup>.":[221]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
