{"id":"https://openalex.org/W3177822916","doi":"https://doi.org/10.1109/jbhi.2022.3193108","title":"GREN: Graph-Regularized Embedding Network for Weakly-Supervised Disease Localization in X-Ray Images","display_name":"GREN: Graph-Regularized Embedding Network for Weakly-Supervised Disease Localization in X-Ray Images","publication_year":2022,"publication_date":"2022-07-27","ids":{"openalex":"https://openalex.org/W3177822916","doi":"https://doi.org/10.1109/jbhi.2022.3193108","mag":"3177822916","pmid":"https://pubmed.ncbi.nlm.nih.gov/35895637"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2022.3193108","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2022.3193108","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032712717","display_name":"Baolian Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Baolian Qi","raw_affiliation_strings":["Center for Pattern Recognition and Intelligent Medicine (PRIM), HwaMei Hospital, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China"],"affiliations":[{"raw_affiliation_string":"Center for Pattern Recognition and Intelligent Medicine (PRIM), HwaMei Hospital, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073574475","display_name":"Gangming Zhao","orcid":"https://orcid.org/0000-0001-8441-5462"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Gangming Zhao","raw_affiliation_strings":["Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101806086","display_name":"Xin Wei","orcid":"https://orcid.org/0000-0002-1398-0445"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Wei","raw_affiliation_strings":["Center for Pattern Recognition and Intelligent Medicine (PRIM), HwaMei Hospital, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China"],"affiliations":[{"raw_affiliation_string":"Center for Pattern Recognition and Intelligent Medicine (PRIM), HwaMei Hospital, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051978172","display_name":"Changde Du","orcid":"https://orcid.org/0000-0002-0084-433X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changde Du","raw_affiliation_strings":["National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112150","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030668126","display_name":"Chengwei Pan","orcid":"https://orcid.org/0000-0003-0497-7903"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengwei Pan","raw_affiliation_strings":["Institute of Artificial Intelligence, Beihang University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108557359","display_name":"Yizhou Yu","orcid":"https://orcid.org/0000-0002-0470-5548"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yizhou Yu","raw_affiliation_strings":["Department of Computer Science, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100782319","display_name":"Jinpeng Li","orcid":"https://orcid.org/0000-0003-1752-8883"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinpeng Li","raw_affiliation_strings":["Center for Pattern Recognition and Intelligent Medicine (PRIM), HwaMei Hospital, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China"],"affiliations":[{"raw_affiliation_string":"Center for Pattern Recognition and Intelligent Medicine (PRIM), HwaMei Hospital, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Ningbo Institute of Life and Health Industry, University of Chinese Academy of Sciences, Ningbo, Zhejiang, China","institution_ids":["https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5032712717"],"corresponding_institution_ids":["https://openalex.org/I4210165038"],"apc_list":null,"apc_paid":null,"fwci":1.4583,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.84082544,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"26","issue":"10","first_page":"5142","last_page":"5153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.663947343826294},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5696277618408203},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5065354108810425},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48667722940444946},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.45261839032173157},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.41422924399375916},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.35428404808044434},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3016203045845032},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.2416466772556305},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.22644099593162537}],"concepts":[{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.663947343826294},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5696277618408203},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5065354108810425},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48667722940444946},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.45261839032173157},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.41422924399375916},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.35428404808044434},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3016203045845032},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.2416466772556305},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.22644099593162537}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013909","descriptor_name":"Thorax","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013909","descriptor_name":"Thorax","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013909","descriptor_name":"Thorax","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014965","descriptor_name":"X-Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014965","descriptor_name":"X-Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014965","descriptor_name":"X-Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2022.3193108","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2022.3193108","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:35895637","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35895637","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.7799999713897705}],"awards":[{"id":"https://openalex.org/G1970220739","display_name":null,"funder_award_id":"2021431314","funder_id":"https://openalex.org/F4320328634","funder_display_name":"Medical Scientific Research Foundation of Zhejiang Province, China"},{"id":"https://openalex.org/G3835069605","display_name":null,"funder_award_id":"62106248","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320328634","display_name":"Medical Scientific Research Foundation of Zhejiang Province, China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W2108598243","https://openalex.org/W2109376948","https://openalex.org/W2194775991","https://openalex.org/W2295107390","https://openalex.org/W2418676188","https://openalex.org/W2611650229","https://openalex.org/W2746791238","https://openalex.org/W2770165365","https://openalex.org/W2770241596","https://openalex.org/W2786052267","https://openalex.org/W2798510080","https://openalex.org/W2803411968","https://openalex.org/W2810230071","https://openalex.org/W2884149198","https://openalex.org/W2886327376","https://openalex.org/W2888052345","https://openalex.org/W2888397986","https://openalex.org/W2899771611","https://openalex.org/W2905320789","https://openalex.org/W2916754336","https://openalex.org/W2950477994","https://openalex.org/W2952587392","https://openalex.org/W2962708065","https://openalex.org/W2962858109","https://openalex.org/W2963182609","https://openalex.org/W2963466845","https://openalex.org/W2963733622","https://openalex.org/W2963802513","https://openalex.org/W2963967185","https://openalex.org/W2964304919","https://openalex.org/W2993044507","https://openalex.org/W3012803970","https://openalex.org/W3037793939","https://openalex.org/W3089438819","https://openalex.org/W3092087745","https://openalex.org/W3096139539","https://openalex.org/W3098325931","https://openalex.org/W3101156210","https://openalex.org/W3118287301","https://openalex.org/W3123778877","https://openalex.org/W3151449316","https://openalex.org/W3155586006","https://openalex.org/W3157723138","https://openalex.org/W3172835673","https://openalex.org/W3198758176","https://openalex.org/W3207962968","https://openalex.org/W3217167023","https://openalex.org/W4210430456","https://openalex.org/W4210664566","https://openalex.org/W4214696399","https://openalex.org/W4214736134","https://openalex.org/W6738979955","https://openalex.org/W6751711410","https://openalex.org/W6756040250","https://openalex.org/W6765981872"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2037549926","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W2419146053","https://openalex.org/W4388890789","https://openalex.org/W2088247287","https://openalex.org/W2963903416"],"abstract_inverted_index":{"Locating":[0],"diseases":[1,114],"in":[2,54,197],"chest":[3,116,233],"X-ray":[4,117,234],"images":[5,152,178],"with":[6,19],"few":[7],"careful":[8],"annotations":[9],"saves":[10],"large":[11],"human":[12],"effort.":[13],"Recent":[14],"works":[15],"approached":[16],"this":[17,69],"task":[18],"innovative":[20],"weakly-supervised":[21,237],"algorithms":[22],"such":[23],"as":[24,79,216],"multi-instance":[25],"learning":[26],"(MIL)":[27],"and":[28,63,76,81,90,109,129,168,177,206],"class":[29],"activation":[30],"maps":[31],"(CAM),":[32],"however,":[33],"these":[34],"methods":[35],"often":[36],"yield":[37],"inaccurate":[38],"or":[39],"incomplete":[40],"regions.":[41,92,146],"One":[42],"of":[43,49,171,188,223],"the":[44,47,50,55,64,74,95,99,107,126,132,136,148,166,184,189,198,203,211,228],"reasons":[45],"is":[46,84,153],"neglection":[48],"pathological":[51],"implications":[52],"hidden":[53],"relationship":[56,65,134,149],"across":[57,66],"anatomical":[58],"regions":[59,176],"within":[60],"each":[61],"image":[62],"images.":[67,118,162],"In":[68,181],"paper,":[70],"we":[71,97,201],"argue":[72],"that":[73],"cross-region":[75],"cross-image":[77],"relationship,":[78,96],"contextual":[80],"compensating":[82],"information,":[83],"vital":[85],"to":[86,112,124,143,159,192,209,218],"obtain":[87],"more":[88],"consistent":[89],"integral":[91],"To":[93],"model":[94],"propose":[98],"Graph":[100],"Regularized":[101],"Embedding":[102],"Network":[103],"(GREN),":[104],"which":[105,213],"leverages":[106],"intra-image":[108,133,141],"inter-image":[110,157],"information":[111,195],"locate":[113],"on":[115,231],"GREN":[119],"uses":[120],"a":[121,172],"pre-trained":[122],"U-Net":[123],"segment":[125],"lung":[127,137],"lobes,":[128],"then":[130],"models":[131],"between":[135,150],"lobes":[138],"using":[139],"an":[140,156],"graph":[142,158],"compare":[144,160],"different":[145],"Meanwhile,":[147],"in-batch":[151],"modeled":[154],"by":[155],"multiple":[161,175],"This":[163],"process":[164,170],"mimics":[165],"training":[167],"decision-making":[169],"radiologist:":[173],"comparing":[174],"for":[179,183,236],"diagnosis.":[180],"order":[182],"deep":[185],"embedding":[186],"layers":[187],"neural":[190],"network":[191],"retain":[193],"structural":[194],"(important":[196],"localization":[199],"task),":[200],"use":[202],"Hash":[204],"coding":[205],"Hamming":[207],"distance":[208],"compute":[210],"graphs,":[212],"are":[214,242],"used":[215],"regularizers":[217],"facilitate":[219],"training.":[220],"By":[221],"means":[222],"this,":[224],"our":[225],"approach":[226],"achieves":[227],"state-of-the-art":[229],"result":[230],"NIH":[232],"dataset":[235],"disease":[238],"localization.":[239],"Our":[240],"codes":[241],"accessible":[243],"online.":[244]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
