{"id":"https://openalex.org/W4220904934","doi":"https://doi.org/10.1109/jbhi.2022.3156166","title":"MDADP: A Webserver Integrating Database and Prediction Tools for Microbe-Disease Associations","display_name":"MDADP: A Webserver Integrating Database and Prediction Tools for Microbe-Disease Associations","publication_year":2022,"publication_date":"2022-03-07","ids":{"openalex":"https://openalex.org/W4220904934","doi":"https://doi.org/10.1109/jbhi.2022.3156166","pmid":"https://pubmed.ncbi.nlm.nih.gov/35254998"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2022.3156166","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2022.3156166","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/9813470/09729447.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/6221020/9813470/09729447.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100710637","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-5065-8447"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Wang","raw_affiliation_strings":["College of Computer Engineering &amp; Applied Mathematics, Changsha University, Changsha, China","Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":"https://orcid.org/0000-0002-5065-8447","affiliations":[{"raw_affiliation_string":"College of Computer Engineering &amp; Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100348558","display_name":"Hao Li","orcid":"https://orcid.org/0000-0002-1752-5167"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Li","raw_affiliation_strings":["Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":"https://orcid.org/0000-0002-1752-5167","affiliations":[{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451692","display_name":"Yuqi Wang","orcid":"https://orcid.org/0000-0003-3241-7639"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuqi Wang","raw_affiliation_strings":["Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":"https://orcid.org/0000-0003-3241-7639","affiliations":[{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100605882","display_name":"Yihong Tan","orcid":"https://orcid.org/0000-0001-7619-8090"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yihong Tan","raw_affiliation_strings":["College of Computer Engineering &amp; Applied Mathematics, Changsha University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0001-7619-8090","affiliations":[{"raw_affiliation_string":"College of Computer Engineering &amp; Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100667267","display_name":"Zhiping Chen","orcid":"https://orcid.org/0009-0009-5061-6472"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiping Chen","raw_affiliation_strings":["College of Computer Engineering &amp; Applied Mathematics, Changsha University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0003-4759-3774","affiliations":[{"raw_affiliation_string":"College of Computer Engineering &amp; Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000687523","display_name":"Tingrui Pei","orcid":"https://orcid.org/0000-0002-1205-5899"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingrui Pei","raw_affiliation_strings":["College of Computer Engineering &amp; Applied Mathematics, Changsha University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-1205-5899","affiliations":[{"raw_affiliation_string":"College of Computer Engineering &amp; Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":"https://orcid.org/0000-0001-6406-1142","affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100710637"],"corresponding_institution_ids":["https://openalex.org/I198357462","https://openalex.org/I4610292"],"apc_list":null,"apc_paid":null,"fwci":0.6076,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.63375614,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"26","issue":"7","first_page":"3427","last_page":"3434"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9700999855995178,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9595999717712402,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7744579315185547},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5251262784004211},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4422699809074402},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3678690791130066},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3604694902896881},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.21304923295974731}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7744579315185547},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5251262784004211},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4422699809074402},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3678690791130066},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3604694902896881},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.21304923295974731}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2022.3156166","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2022.3156166","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/9813470/09729447.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:35254998","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35254998","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1109/jbhi.2022.3156166","is_oa":true,"landing_page_url":"https://doi.org/10.1109/jbhi.2022.3156166","pdf_url":"https://ieeexplore.ieee.org/ielx7/6221020/9813470/09729447.pdf","source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2346887922","display_name":null,"funder_award_id":"2019JJ70010","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G3107359239","display_name":null,"funder_award_id":"61873221","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4220904934.pdf","grobid_xml":"https://content.openalex.org/works/W4220904934.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W22940787","https://openalex.org/W2008054523","https://openalex.org/W2012606594","https://openalex.org/W2016853666","https://openalex.org/W2018505426","https://openalex.org/W2020398205","https://openalex.org/W2041073071","https://openalex.org/W2062533841","https://openalex.org/W2141222510","https://openalex.org/W2145336165","https://openalex.org/W2322763599","https://openalex.org/W2480418585","https://openalex.org/W2567465856","https://openalex.org/W2739664659","https://openalex.org/W2769216256","https://openalex.org/W2807176368","https://openalex.org/W2839708775","https://openalex.org/W2891956880","https://openalex.org/W2896473060","https://openalex.org/W2899915536","https://openalex.org/W2936110251","https://openalex.org/W2938306835","https://openalex.org/W2948246500","https://openalex.org/W2988135813","https://openalex.org/W3017158857","https://openalex.org/W3047212992","https://openalex.org/W3048259272","https://openalex.org/W3116604690","https://openalex.org/W3119762536","https://openalex.org/W3126358966","https://openalex.org/W3168379750","https://openalex.org/W4211248483","https://openalex.org/W4232900961","https://openalex.org/W4242984713","https://openalex.org/W4256251994","https://openalex.org/W6600911880","https://openalex.org/W6796085520"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"More":[0],"and":[1,51,123,139,171,223],"more":[2],"evidence":[3],"has":[4],"demonstrated":[5],"that":[6,62,196,210],"microbiota":[7],"play":[8],"important":[9],"roles":[10],"in":[11,36,77,92,111,221],"the":[12,16,112,135,140,192],"life":[13],"processes":[14],"of":[15,43,217],"human":[17],"body.":[18],"In":[19],"recent":[20],"years,":[21],"various":[22],"computational":[23,146],"methods":[24,45],"have":[25,126,148],"been":[26,127,149],"proposed":[27,87],"for":[28,68,103,167,178,184,219],"identifying":[29],"potentially":[30],"disease-associated":[31],"microbes":[32,125,183],"to":[33,88,152,169,180],"save":[34],"costs":[35],"traditional":[37],"biological":[38],"experiments.":[39],"However,":[40],"prediction":[41,101,205],"performances":[42],"these":[44],"are":[46,59],"generally":[47],"limited":[48,60],"by":[49],"outdated":[50],"incomplete":[52],"datasets.":[53],"And":[54,131],"moreover,":[55],"until":[56],"now,":[57],"there":[58],"studies":[61,105],"can":[63,161,227],"provide":[64,162],"visual":[65],"predictive":[66],"tools":[67,102,177],"inferring":[69],"possible":[70],"microbe-disease":[71],"associations":[72],"(MDAs)":[73],"as":[74],"well.":[75],"Hence,":[76],"this":[78],"manuscript,":[79],"a":[80,94,158,198,214],"novel":[81],"webserver":[82],"called":[83],"MDADP":[84,160,190,226],"will":[85,106,212],"be":[86,107,213,228],"identify":[89,153,181],"latent":[90],"MDAs,":[91],"which,":[93],"new":[95,199],"MDA":[96,115,200,204],"database":[97,201],"together":[98,151],"with":[99,202],"interactive":[100,165],"MDAs":[104,119,173],"designed":[108],"simultaneously.":[109],"Especially,":[110],"newly":[113],"constructed":[114],"database,":[116],"2019":[117],"known":[118],"between":[120],"58":[121],"diseases":[122],"703":[124],"manually":[128],"collected":[129],"first.":[130],"then,":[132],"through":[133],"adopting":[134],"average":[136],"ranking":[137],"method":[138,142],"co-confidence":[141],"respectively,":[143],"eight":[144],"representative":[145],"models":[147],"integrated":[150],"potential":[154],"disease-related":[155,224],"microbes.":[156],"As":[157],"result,":[159],"not":[163],"only":[164],"features":[166],"users":[168,179],"access":[170],"capture":[172],"entities,":[174],"but":[175],"alsoeffective":[176],"candidate":[182],"different":[185],"diseases.":[186],"To":[187],"our":[188],"knowledge,":[189],"is":[191],"first":[193],"online":[194],"platform":[195],"incorporates":[197],"comprehensive":[203],"tools.":[206],"Therefore,":[207],"we":[208],"believe":[209],"it":[211],"valuable":[215],"source":[216],"information":[218],"researches":[220],"microbiology":[222],"fields.":[225],"accessed":[229],"at":[230],"http://mdadp.leelab2997.cn.":[231]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
