{"id":"https://openalex.org/W3197239359","doi":"https://doi.org/10.1109/jbhi.2021.3110766","title":"Visualization and Analysis of Single Cell RNA-Seq Data by Maximizing Correntropy Based Non-Negative Low Rank Representation","display_name":"Visualization and Analysis of Single Cell RNA-Seq Data by Maximizing Correntropy Based Non-Negative Low Rank Representation","publication_year":2021,"publication_date":"2021-09-08","ids":{"openalex":"https://openalex.org/W3197239359","doi":"https://doi.org/10.1109/jbhi.2021.3110766","mag":"3197239359","pmid":"https://pubmed.ncbi.nlm.nih.gov/34495855"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2021.3110766","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2021.3110766","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072372184","display_name":"Cui-Na Jiao","orcid":"https://orcid.org/0000-0001-7479-8105"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cui-Na Jiao","raw_affiliation_strings":["School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0001-7479-8105","affiliations":[{"raw_affiliation_string":"School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073144090","display_name":"Jin\u2010Xing Liu","orcid":"https://orcid.org/0000-0001-6104-2149"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0001-6104-2149","affiliations":[{"raw_affiliation_string":"School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100347490","display_name":"Juan Wang","orcid":"https://orcid.org/0000-0003-3934-0435"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Wang","raw_affiliation_strings":["School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0003-3934-0435","affiliations":[{"raw_affiliation_string":"School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007539735","display_name":"Junliang Shang","orcid":"https://orcid.org/0000-0002-8488-2228"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junliang Shang","raw_affiliation_strings":["School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0002-8488-2228","affiliations":[{"raw_affiliation_string":"School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0002-2695-1926","affiliations":[{"raw_affiliation_string":"School of Computer Science and School of Engineering, Qufu Normal University, Rizhao, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I202126657"],"apc_list":null,"apc_paid":null,"fwci":0.7405,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.68418998,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"26","issue":"4","first_page":"1872","last_page":"1882"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10500","display_name":"Sparse and Compressive Sensing Techniques","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12676","display_name":"Machine Learning and ELM","score":0.9761999845504761,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.6769247055053711},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6752601861953735},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6686869859695435},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6670540571212769},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5167533755302429},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.510298490524292},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4902952015399933},{"id":"https://openalex.org/keywords/subspace-topology","display_name":"Subspace topology","score":0.47861188650131226},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46376606822013855},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4379054307937622},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.43539857864379883},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.4338664412498474},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24125102162361145},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.12393894791603088}],"concepts":[{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.6769247055053711},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6752601861953735},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6686869859695435},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6670540571212769},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5167533755302429},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.510298490524292},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4902952015399933},{"id":"https://openalex.org/C32834561","wikidata":"https://www.wikidata.org/wiki/Q660730","display_name":"Subspace topology","level":2,"score":0.47861188650131226},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46376606822013855},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4379054307937622},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.43539857864379883},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.4338664412498474},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24125102162361145},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.12393894791603088},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2021.3110766","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2021.3110766","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:34495855","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34495855","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1350247206","display_name":null,"funder_award_id":"62172254","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G247010507","display_name":null,"funder_award_id":"61873001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3943136785","display_name":null,"funder_award_id":"61702299","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5609717784","display_name":"\u57fa\u4e8e\u4f4e\u79e9\u548c\u56fe\u6b63\u5219\u7ea6\u675f\u7684\u77e9\u9635\u5206\u89e3\u65b9\u6cd5\u7814\u7a76\u53ca\u5728\u764c\u75c7\u591a\u7ec4\u5b66\u6570\u636e\u4e2d\u7684\u5e94\u7528","funder_award_id":"61872220","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1552434751","https://openalex.org/W1967489571","https://openalex.org/W1967722387","https://openalex.org/W1968580628","https://openalex.org/W1972552174","https://openalex.org/W1979283544","https://openalex.org/W1993962865","https://openalex.org/W2013055991","https://openalex.org/W2021786044","https://openalex.org/W2023887100","https://openalex.org/W2031550338","https://openalex.org/W2033072655","https://openalex.org/W2051658465","https://openalex.org/W2067974618","https://openalex.org/W2068881679","https://openalex.org/W2081837126","https://openalex.org/W2103972604","https://openalex.org/W2128728535","https://openalex.org/W2132914434","https://openalex.org/W2149620660","https://openalex.org/W2153344005","https://openalex.org/W2160197181","https://openalex.org/W2187089797","https://openalex.org/W2297381334","https://openalex.org/W2307567449","https://openalex.org/W2308998873","https://openalex.org/W2334512168","https://openalex.org/W2337733832","https://openalex.org/W2468752595","https://openalex.org/W2556671754","https://openalex.org/W2598326928","https://openalex.org/W2757743631","https://openalex.org/W2789677693","https://openalex.org/W2792991240","https://openalex.org/W2804460316","https://openalex.org/W2899212028","https://openalex.org/W2918882492","https://openalex.org/W2949177718","https://openalex.org/W2953251392","https://openalex.org/W2978631110","https://openalex.org/W2998065416","https://openalex.org/W3007839679","https://openalex.org/W3022825011","https://openalex.org/W3091988478","https://openalex.org/W3126704321","https://openalex.org/W3186473305","https://openalex.org/W4220816080","https://openalex.org/W4250955649","https://openalex.org/W4255061985","https://openalex.org/W6681822384","https://openalex.org/W6755517064"],"related_works":["https://openalex.org/W1980381208","https://openalex.org/W2364594919","https://openalex.org/W2167092671","https://openalex.org/W1861706286","https://openalex.org/W2068608913","https://openalex.org/W2219338811","https://openalex.org/W2149583853","https://openalex.org/W2143002539","https://openalex.org/W1995723671","https://openalex.org/W2164647769"],"abstract_inverted_index":{"The":[0],"exploration":[1],"of":[2,17,21,28,47,121,131,148,174,180],"single":[3,56],"cell":[4,31,57,181,198],"RNA-sequencing":[5],"(scRNA-seq)":[6],"technology":[7],"generates":[8],"a":[9,59,111],"new":[10],"perspective":[11],"to":[12,25,40,91,109,158],"analyze":[13,55,169],"biological":[14],"problems.":[15],"One":[16],"the":[18,79,92,100,103,116,129,134,146,149,160,165,170,178],"major":[19],"applications":[20],"scRNA-seq":[22,42,61,190],"data":[23,43,62,191],"is":[24,35,76,88,107,136,156],"discover":[26],"subtypes":[27,199],"cells":[29,132],"by":[30,139],"clustering.":[32],"Nevertheless,":[33],"it":[34],"challengeable":[36],"for":[37,114],"traditional":[38],"methods":[39],"handle":[41],"with":[44],"high":[45,93],"level":[46],"technical":[48],"noise":[49,94],"and":[50,71,95,118,152,172,185,201],"notorious":[51],"dropouts.":[52],"To":[53],"better":[54],"data,":[58],"novel":[60],"analysis":[63],"model":[64],"called":[65],"Maximum":[66],"correntropy":[67,81],"criterion":[68],"based":[69],"Non-negative":[70],"Low":[72],"Rank":[73],"Representation":[74],"(MccNLRR)":[75],"introduced.":[77],"Specifically,":[78],"maximum":[80],"criterion,":[82],"as":[83,128],"an":[84,142],"effective":[85],"loss":[86],"function,":[87],"more":[89],"robust":[90],"large":[96],"outliers":[97],"existed":[98],"in":[99,133],"data.":[101,122],"Moreover,":[102],"low":[104],"rank":[105],"representation":[106],"proven":[108],"be":[110],"powerful":[112],"tool":[113],"capturing":[115],"global":[117],"local":[119],"structures":[120],"Therefore,":[123],"some":[124],"important":[125],"information,":[126],"such":[127],"similarity":[130],"subspace,":[135],"also":[137,168],"extracted":[138],"it.":[140],"Then,":[141],"iterative":[143],"algorithm":[144],"on":[145,189],"basis":[147],"half-quadratic":[150],"optimization":[151,162],"alternating":[153],"direction":[154],"method":[155,195],"developed":[157],"settle":[159],"complex":[161],"problem.":[163],"Before":[164],"experiment,":[166],"we":[167],"convergence":[171],"robustness":[173],"MccNLRR.":[175],"At":[176],"last,":[177],"results":[179],"clustering,":[182],"visualization":[183],"analysis,":[184],"gene":[186],"markers":[187],"selection":[188],"reveal":[192],"that":[193],"MccNLRR":[194],"can":[196],"distinguish":[197],"accurately":[200],"robustly.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
