{"id":"https://openalex.org/W3131457306","doi":"https://doi.org/10.1109/jbhi.2021.3062234","title":"Chromosome Classification and Straightening Based on an Interleaved and Multi-Task Network","display_name":"Chromosome Classification and Straightening Based on an Interleaved and Multi-Task Network","publication_year":2021,"publication_date":"2021-02-25","ids":{"openalex":"https://openalex.org/W3131457306","doi":"https://doi.org/10.1109/jbhi.2021.3062234","mag":"3131457306","pmid":"https://pubmed.ncbi.nlm.nih.gov/33630742"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2021.3062234","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2021.3062234","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101769250","display_name":"Jiping Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiping Zhang","raw_affiliation_strings":["School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0003-3305-3400","affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101578645","display_name":"Wenjing Hu","orcid":"https://orcid.org/0000-0003-3618-5273"},"institutions":[{"id":"https://openalex.org/I4210108664","display_name":"International Peace Maternity & Child Health Hospital","ror":"https://ror.org/01byttc20","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210108664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjing Hu","raw_affiliation_strings":["International Peace Maternity and Child Health Hospital of China, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Peace Maternity and Child Health Hospital of China, Shanghai, China","institution_ids":["https://openalex.org/I4210108664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100647304","display_name":"Shuyuan Li","orcid":"https://orcid.org/0000-0002-8160-1363"},"institutions":[{"id":"https://openalex.org/I4210108664","display_name":"International Peace Maternity & Child Health Hospital","ror":"https://ror.org/01byttc20","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210108664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuyuan Li","raw_affiliation_strings":["International Peace Maternity and Child Health Hospital of China, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Peace Maternity and Child Health Hospital of China, Shanghai, China","institution_ids":["https://openalex.org/I4210108664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074704908","display_name":"Yaofeng Wen","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaofeng Wen","raw_affiliation_strings":["School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015559377","display_name":"Yong Bao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yong Bao","raw_affiliation_strings":["Changzhou Industrial Technology Research Institute of Zhejiang University, Changzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changzhou Industrial Technology Research Institute of Zhejiang University, Changzhou, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068700420","display_name":"Hefeng Huang","orcid":"https://orcid.org/0000-0003-4344-8019"},"institutions":[{"id":"https://openalex.org/I4210108664","display_name":"International Peace Maternity & Child Health Hospital","ror":"https://ror.org/01byttc20","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210108664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hefeng Huang","raw_affiliation_strings":["International Peace Maternity and Child Health Hospital of China, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Peace Maternity and Child Health Hospital of China, Shanghai, China","institution_ids":["https://openalex.org/I4210108664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103134144","display_name":"Chenming Xu","orcid":"https://orcid.org/0000-0002-1667-3539"},"institutions":[{"id":"https://openalex.org/I4210108664","display_name":"International Peace Maternity & Child Health Hospital","ror":"https://ror.org/01byttc20","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210108664"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenming Xu","raw_affiliation_strings":["International Peace Maternity and Child Health Hospital of China, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Peace Maternity and Child Health Hospital of China, Shanghai, China","institution_ids":["https://openalex.org/I4210108664"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081179416","display_name":"Dahong Qian","orcid":"https://orcid.org/0000-0001-9715-6674"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dahong Qian","raw_affiliation_strings":["Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0001-9715-6674","affiliations":[{"raw_affiliation_string":"Institute of Medical Robotics, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2645,"currency":"USD","value_usd":2645},"apc_paid":null,"fwci":3.9691,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.94424251,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"25","issue":"8","first_page":"3240","last_page":"3251"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9722999930381775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.705402672290802},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6043692827224731},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5474510788917542},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.518714964389801},{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.4589468240737915},{"id":"https://openalex.org/keywords/karyotype","display_name":"Karyotype","score":0.41069281101226807},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32252100110054016},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28542155027389526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.256513386964798},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14334583282470703}],"concepts":[{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.705402672290802},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6043692827224731},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5474510788917542},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.518714964389801},{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.4589468240737915},{"id":"https://openalex.org/C53226629","wikidata":"https://www.wikidata.org/wiki/Q189967","display_name":"Karyotype","level":4,"score":0.41069281101226807},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32252100110054016},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28542155027389526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.256513386964798},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14334583282470703},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007621","descriptor_name":"Karyotyping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007621","descriptor_name":"Karyotyping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007621","descriptor_name":"Karyotyping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/jbhi.2021.3062234","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2021.3062234","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"pmid:33630742","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33630742","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1526608479","display_name":null,"funder_award_id":"2018YFC0116402","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1686810756","https://openalex.org/W1901129140","https://openalex.org/W1963943462","https://openalex.org/W1964569440","https://openalex.org/W1987201693","https://openalex.org/W1991689531","https://openalex.org/W2008421775","https://openalex.org/W2012031796","https://openalex.org/W2013640163","https://openalex.org/W2038232770","https://openalex.org/W2048303503","https://openalex.org/W2048371112","https://openalex.org/W2053178003","https://openalex.org/W2060519228","https://openalex.org/W2078637082","https://openalex.org/W2097117768","https://openalex.org/W2109255472","https://openalex.org/W2112357322","https://openalex.org/W2127604532","https://openalex.org/W2134357743","https://openalex.org/W2138264528","https://openalex.org/W2144738119","https://openalex.org/W2159450535","https://openalex.org/W2162427092","https://openalex.org/W2194775991","https://openalex.org/W2307770531","https://openalex.org/W2520149872","https://openalex.org/W2532173015","https://openalex.org/W2736536606","https://openalex.org/W2767421475","https://openalex.org/W2768518967","https://openalex.org/W2794198923","https://openalex.org/W2895804883","https://openalex.org/W2916798096","https://openalex.org/W2940262938","https://openalex.org/W2950014519","https://openalex.org/W2963402313","https://openalex.org/W2963446712","https://openalex.org/W2964121744","https://openalex.org/W3014641072","https://openalex.org/W6631190155","https://openalex.org/W6637373629","https://openalex.org/W6639824700","https://openalex.org/W6745447533","https://openalex.org/W6761630670"],"related_works":["https://openalex.org/W2108498225","https://openalex.org/W2390806584","https://openalex.org/W2357064814","https://openalex.org/W4312270766","https://openalex.org/W2060929468","https://openalex.org/W2586947668","https://openalex.org/W2032395716","https://openalex.org/W2022999990","https://openalex.org/W2390766987","https://openalex.org/W2353740429"],"abstract_inverted_index":{"Karyotyping":[0],"is":[1,33,99,113,163],"the":[2,6,13,42,54,60,93,96,102,111,120,124,127,134,138,142,146,157,175,179,187,221],"gold":[3],"standard":[4],"in":[5,16,137,170,216],"detection":[7],"of":[8,38,104,151,159,178,186,201,220],"chromosomal":[9],"abnormalities.":[10],"To":[11],"facilitate":[12],"diagnostic":[14],"process,":[15],"this":[17],"paper,":[18],"a":[19,66],"method":[20,36],"for":[21,70,86,167,203,208],"chromosome":[22,71,87,98,112,168,180,222],"classification":[23,150,205],"and":[24,30,74,79,89,116,153,206,218,224],"straightening":[25,212],"based":[26],"on":[27,191],"an":[28,50,164],"interleaved":[29,51],"multi-task":[31],"network":[32],"proposed.":[34],"This":[35],"consists":[37],"three":[39],"stages.":[40],"In":[41,53,92],"first":[43,61,110,139],"stage,":[44,56,95],"multi-scale":[45],"features":[46,58,76],"are":[47,63,77,130],"learned":[48],"via":[49],"network.":[52],"second":[55],"high-resolution":[57],"from":[59,145],"stage":[62],"input":[64],"to":[65,81,119,182],"convolution":[67],"neural":[68],"subnetwork":[69],"joint":[72],"detection,":[73],"other":[75],"fused":[78],"fed":[80],"two":[82,108],"multi-layer":[83],"perceptron":[84],"subnetworks":[85],"type":[88,152,204],"polarity":[90,154,209],"classification.":[91,210],"third":[94],"bent":[97,147],"straightened":[100],"with":[101,141,194],"help":[103],"detected":[105,121],"joints":[106],"by":[107,132],"steps:":[109],"separated,":[114],"rotated":[115],"assembled":[117],"according":[118],"joints;":[122],"then":[123],"areas":[125],"around":[126],"bending":[128],"points":[129],"recovered":[131],"replacing":[133],"gaps":[135],"formed":[136],"step":[140,166],"sampled":[143],"intensities":[144],"chromosome.":[148],"The":[149,211],"can":[155],"expedite":[156],"process":[158],"producing":[160],"karyograms,":[161],"which":[162],"important":[165],"diagnosis":[169],"clinical":[171],"practice.":[172],"Straightening":[173],"makes":[174],"banding":[176],"information":[177],"easier":[181],"read.":[183],"Classification":[184],"results":[185,213],"5-fold":[188],"cross":[189],"validation":[190],"our":[192],"dataset":[193],"32":[195],"810":[196],"chromosomes":[197],"achieve":[198],"average":[199],"accuracy":[200],"98.1%":[202],"99.8%":[207],"show":[214],"consistency":[215],"intensity":[217],"length":[219],"before":[223],"after":[225],"straightening.":[226]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
