{"id":"https://openalex.org/W3128928223","doi":"https://doi.org/10.1109/jbhi.2021.3058518","title":"Quantifying Intensities of Transcription Factor-DNA Binding by Learning From an Ensemble of Protein Binding Microarrays","display_name":"Quantifying Intensities of Transcription Factor-DNA Binding by Learning From an Ensemble of Protein Binding Microarrays","publication_year":2021,"publication_date":"2021-02-11","ids":{"openalex":"https://openalex.org/W3128928223","doi":"https://doi.org/10.1109/jbhi.2021.3058518","mag":"3128928223","pmid":"https://pubmed.ncbi.nlm.nih.gov/33571101"},"language":"en","primary_location":{"id":"doi:10.1109/jbhi.2021.3058518","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2021.3058518","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010017304","display_name":"Lijun Quan","orcid":"https://orcid.org/0000-0003-4551-4198"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijun Quan","raw_affiliation_strings":["Jiangsu Province KeyLab for Information Processing Technologies, Suzhou, China","School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-4551-4198","affiliations":[{"raw_affiliation_string":"Jiangsu Province KeyLab for Information Processing Technologies, Suzhou, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053512734","display_name":"Jie Mei","orcid":"https://orcid.org/0000-0003-4221-6275"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Mei","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061966798","display_name":"Ruji He","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruji He","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062894678","display_name":"Xiaoyu Sun","orcid":"https://orcid.org/0000-0001-5337-5680"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyu Sun","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073740698","display_name":"Liangpeng Nie","orcid":"https://orcid.org/0000-0003-4210-8039"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangpeng Nie","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070011755","display_name":"Kailong Li","orcid":"https://orcid.org/0000-0002-3311-5782"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kailong Li","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061252858","display_name":"Qiang Lyu","orcid":"https://orcid.org/0000-0003-2371-835X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Lyu","raw_affiliation_strings":["Jiangsu Province KeyLab for Information Processing Technologies, Suzhou, China","School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-2371-835X","affiliations":[{"raw_affiliation_string":"Jiangsu Province KeyLab for Information Processing Technologies, Suzhou, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I3923682"],"apc_list":null,"apc_paid":null,"fwci":0.5551,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.62527721,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"25","issue":"7","first_page":"2811","last_page":"2819"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.6361657381057739},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6262025237083435},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.590113639831543},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5674430131912231},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5643196105957031},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.545531153678894},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.49562227725982666},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.48749375343322754},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.42948195338249207},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4276418089866638},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4270051419734955},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.41690513491630554},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4140443801879883},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4020676612854004},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27960968017578125},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24316349625587463},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.22161823511123657},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.20075181126594543},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1985226273536682}],"concepts":[{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.6361657381057739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6262025237083435},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.590113639831543},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5674430131912231},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5643196105957031},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.545531153678894},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.49562227725982666},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.48749375343322754},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.42948195338249207},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4276418089866638},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4270051419734955},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.41690513491630554},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4140443801879883},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4020676612854004},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27960968017578125},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24316349625587463},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.22161823511123657},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20075181126594543},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1985226273536682},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1109/jbhi.2021.3058518","is_oa":false,"landing_page_url":"https://doi.org/10.1109/jbhi.2021.3058518","pdf_url":null,"source":{"id":"https://openalex.org/S2495854775","display_name":"IEEE Journal of Biomedical and Health Informatics","issn_l":"2168-2194","issn":["2168-2194","2168-2208"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Journal of Biomedical and Health Informatics","raw_type":"journal-article"},{"id":"mag:33571101","is_oa":false,"landing_page_url":"https://dialnet.unirioja.es/servlet/articulo?codigo=256381","pdf_url":null,"source":{"id":"https://openalex.org/S4306503768","display_name":"Aula de innovaci\u00f3n educativa","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Aula de innovaci\u00f3n educativa","raw_type":null},{"id":"pmid:33571101","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33571101","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE journal of biomedical and health informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4447477790","display_name":null,"funder_award_id":"31801108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327518","display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1522301498","https://openalex.org/W1600744878","https://openalex.org/W1723510838","https://openalex.org/W1836465849","https://openalex.org/W1924770834","https://openalex.org/W1947481528","https://openalex.org/W1964733653","https://openalex.org/W1975036436","https://openalex.org/W1993616000","https://openalex.org/W1994122295","https://openalex.org/W1995837988","https://openalex.org/W2012114217","https://openalex.org/W2041877620","https://openalex.org/W2069143585","https://openalex.org/W2070076962","https://openalex.org/W2076439598","https://openalex.org/W2080152736","https://openalex.org/W2090804789","https://openalex.org/W2095705004","https://openalex.org/W2112796928","https://openalex.org/W2118628540","https://openalex.org/W2122770938","https://openalex.org/W2125810118","https://openalex.org/W2139212933","https://openalex.org/W2147946837","https://openalex.org/W2149769193","https://openalex.org/W2151754128","https://openalex.org/W2152121035","https://openalex.org/W2159324718","https://openalex.org/W2160995259","https://openalex.org/W2187089797","https://openalex.org/W2198606573","https://openalex.org/W2259938310","https://openalex.org/W2270152626","https://openalex.org/W2291445757","https://openalex.org/W2336509392","https://openalex.org/W2529467427","https://openalex.org/W2554247923","https://openalex.org/W2583337817","https://openalex.org/W2736280136","https://openalex.org/W2737196618","https://openalex.org/W2795735651","https://openalex.org/W2883945062","https://openalex.org/W2896262061","https://openalex.org/W2918598256","https://openalex.org/W2952239877","https://openalex.org/W2953306855","https://openalex.org/W2963355447","https://openalex.org/W2964121744","https://openalex.org/W2964199361","https://openalex.org/W2967059818","https://openalex.org/W3130819465","https://openalex.org/W4248151522","https://openalex.org/W4248318091","https://openalex.org/W6631190155","https://openalex.org/W6638667902","https://openalex.org/W6640212811","https://openalex.org/W6674330103"],"related_works":["https://openalex.org/W2036927633","https://openalex.org/W2152664145","https://openalex.org/W2153561273","https://openalex.org/W2079197459","https://openalex.org/W2165899269","https://openalex.org/W2236968607","https://openalex.org/W2090848290","https://openalex.org/W2146393977","https://openalex.org/W2617836174","https://openalex.org/W2122429294"],"abstract_inverted_index":{"The":[0,163],"control":[1],"of":[2,6,28,58,77,98,139,147,152,160],"the":[3,12,55,140,145,150],"coordinated":[4],"expression":[5],"genes":[7],"is":[8,81,135],"primarily":[9],"regulated":[10],"by":[11],"interactions":[13],"between":[14],"transcription":[15],"factors":[16],"(TFs)":[17],"and":[18],"their":[19],"DNA":[20,46,142],"binding":[21,41,60,100,117],"sites,":[22],"which":[23,134],"are":[24,33,61,155],"an":[25,96,136],"integral":[26],"part":[27],"transcriptional":[29],"regulatory":[30],"networks.":[31],"There":[32],"many":[34],"computational":[35,158],"tools":[36,50],"focused":[37,51],"on":[38,52,95],"determining":[39,54],"TF":[40,161],"or":[42],"unbinding":[43],"to":[44,74,120],"a":[45,66,82],"sequence.":[47],"However,":[48],"other":[49,121],"further":[53],"relative":[56],"preference":[57],"such":[59],"needed.":[62],"Here,":[63],"we":[64],"propose":[65],"regression":[67],"model":[68,91],"with":[69],"deep":[70],"learning,":[71],"called":[72],"SemanticBI,":[73],"predict":[75],"intensities":[76,118],"TF-DNA":[78],"binding.":[79,162],"SemanticBI":[80,111,125,148,165],"convolutional":[83],"neural":[84,87],"network":[85,88],"(CNN)-recurrent":[86],"(RNN)":[89],"architecture":[90],"that":[92,104],"was":[93],"trained":[94],"ensemble":[97],"protein":[99],"microarray":[101],"data":[102],"sets":[103],"covered":[105],"multiple":[106],"TFs.":[107],"Using":[108],"this":[109],"approach,":[110],"exhibited":[112],"superior":[113],"accuracy":[114],"in":[115],"predicting":[116],"compared":[119],"popular":[122],"methods.":[123],"Moreover,":[124],"uncovered":[126],"vectorized":[127],"sequence-oriented":[128],"features":[129],"using":[130],"its":[131],"CNN-RNN":[132],"architecture,":[133],"abstract":[137],"representation":[138],"original":[141],"sequences.":[143],"Additionally,":[144],"use":[146],"raises":[149],"question":[151],"whether":[153],"motifs":[154],"necessary":[156],"for":[157],"models":[159],"online":[164],"service":[166],"can":[167],"be":[168],"accessed":[169],"at":[170],"http://qianglab.scst.suda.edu.cn/semantic/.":[171]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2021-02-15T00:00:00"}
